Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2424 ATGGCACCTTCTCGGGTGGCAGGAGGTTTAGCCCAATCTTCATCGAGTTCTGGAATTTTCTTTCAAGGAGAGGGACAATCGCATAATTTAGTTAACTCTCACTTGAGCTCGTCTTTAGTTAACTCATCTAACACTGTACCTGGAACTGGTCACTCCAACCTTGGTCCAGTTCCCGGGGATATGAACAATGCAATTTTGAACAGTGTTGCAAACTCGGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACGGATGCGAATTCTGCACTCTCTGGTGACCGCCATATGCAAAGAAGTGCAAGCATTAATGGAGACTCGTATTTAAGATTACCTGCTTCGCCATTGTCATTCACATCGAATAATATTAGTATTTCTGGGTCACCTGCAATGGATGGTTCCTCAGTAGTACAGCAGAATTCTCATCAAGATCAGAATGCTCATCAATTGCAGCAGAATCAACAGAAGCTGCAGGGTGCTTCAAGTTCTATGCATTTGCCTGCTTCTCAAACTGGATCGTCTTCGCACCAAATGGGTGCACAAGTTGCAGGATCTTTCATTCAAGATCCAAATAGTATATCCCACTTGCTGAAAAAGCGTAGGCTGGATATCAAACCAGATGATATAATGCAGCAACAGGTAATACAACAGCTTCTTCAGAGACAAGACCCCACACAGTTCCAAGGCCGTAATCCACAGTTACAGGCTATGTTTCAGCAACAGCATAGGCTTAAGCAACAACAAATCTTTCAGTCATTGCCCCAGGCCCAGCGGATGCAATTGATACAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAAATGCAGAGGCAGCAAATACAACAGCAAATGATGCAGCCCTCGGCTGGTGTGAAGCGTCCATATGATGGTGGTGTTGGAGGCGTATGTGCCCGTCGATTGATGCAGTATCTCTATCATCAAAGACAGCGACCAAGCGATAATAGTATTGCATATTGGAGAAAGTTTGTGGCTGAGTATTACTCTCCTCGTGCAAAGCAACGATGGTGTTTGGCATTATATAGTAATTCTGGACACCATACAGCTGGTGTTTTACCGCAAGCAACTACACATGCTTGGCACTGTGACATATGTGGAGCTAAATCTGGAAGAAGGGGATTTGAGGCAACTTTTGATATACTACCCAGACTTAACGTAGTAAAATTTGATGGTGGCGTGATCGATGAACTTTTGTTTTTGGACTTGCCACGGGAAATAAGATTTGCGTCTGGTTTGATGATGTTAGAATATACAAAAGCAGTTCAAGAGTGTGTGTACGAGCAACTTCGTGTTGTTCGTGAGGGTCAACTTCGTATTGTGTTTACTCAAGACCTAAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCATGAAGAACTTCTTCCTCGAAAGTTAGTTGCCCCACAGGTCAACCAATTAGTTCAGGTAGCTCAAAAATGCCAAAGTACAATTTCTGAAAGTGGGTCAGACGGGGTTTCTCAGCATGACTTGCAATCAAACAGCAACATGGTCCTAACTGCTGGGCGTCAGCTTGCGAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGCTTTTCAAAAAGATTTGTGAGAACTTTGCAGATTTCTGAGGTTTGCAATAACATGAAAGATCTAATTGATATCAGTTCTGATCAAGATATCGGAGCAATTGAGAGTTTAAAAAATTATTCACAATTTTCAAGCGCGTCAAAGCACCAGATGCAAAAGATGCAGGAGTTGGAACAGGCAGCAAATGTTCAAGGTCTCCCATCTGATCGAAATACACTTAATAAGCTGATGGCATTGAATCCTGGAGCAAACAATCATATAACCAATAATCACAATATGGGCAATCGGGGTGCTTTGACTGGGCCATCACAAGCTGCTTTGGCAATGTCCAGTTATCAGAATATTCTCATGCGGCAAAACTCGATGAATTCAAGTCCTAGCTCACTTCATCGAGAAGGTTCCCCTTTCAATAACCCGAACCAAAGTCCTTCATCAGCTTCTTTGCAAGGTGCTGGTGCTGCTGCTATAATCCCCGGCTCTATGCAGAATTCGCCTCACAACAGTAGTGGTGGTTTCTCAAATCAACATATATCCGCACAGCAGCGGCAACAGCAGCAACAGCAGCAACAACACCTTCAACAACGCTCGTTAAGTGTGAATAATTTACCTCAACAAAATCACTCACAAGGATCTCAAGGAAATCAATCACTGCAACATCAGATGATCCAGCAGCTACTGCAAGATATGTCAAATAACAATGGCGGGGGAGTGCAACAACAGTCTCATAGTGGACCCACCAATGGGAATAATATGGCAAAGAATAATTTGGGTTTTGTGGGTCAAACTCCACCCACAAGCGGAGGAGGCGGCGGCTCTTCCAGCGGTCCAGCAAATAACGGACCTGTTTCAAGGAGTAATAGCTTCAAAGCAGCTTCAAACAGTGATTCGTCTGCAGCAGCTGGTGGAGGAAGCAACACTGGATTCAACCAGAGATCATCTGACATGCCGCCTCAGAATCTTGCATTGCAAGACATGGCTTCGGATTTTGCCAATGATTTTGCGGATAACCCCTTCTTTAACAGTGATCTAGATGATAACATGGGTTTTAACTGGAAGACATGA 2643 0.4397 MAPSRVAGGLAQSSSSSGIFFQGEGQSHNLVNSHLSSSLVNSSNTVPGTGHSNLGPVPGDMNNAILNSVANSAPSVGASSLVTDANSALSGDRHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAHQLQQNQQKLQGASSSMHLPASQTGSSSHQMGAQVAGSFIQDPNSISHLLKKRRLDIKPDDIMQQQVIQQLLQRQDPTQFQGRNPQLQAMFQQQHRLKQQQIFQSLPQAQRMQLIQQQQQQQQQQQQMQRQQIQQQMMQPSAGVKRPYDGGVGGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKQRWCLALYSNSGHHTAGVLPQATTHAWHCDICGAKSGRRGFEATFDILPRLNVVKFDGGVIDELLFLDLPREIRFASGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQHDLQSNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNNMKDLIDISSDQDIGAIESLKNYSQFSSASKHQMQKMQELEQAANVQGLPSDRNTLNKLMALNPGANNHITNNHNMGNRGALTGPSQAALAMSSYQNILMRQNSMNSSPSSLHREGSPFNNPNQSPSSASLQGAGAAAIIPGSMQNSPHNSSGGFSNQHISAQQRQQQQQQQQHLQQRSLSVNNLPQQNHSQGSQGNQSLQHQMIQQLLQDMSNNNGGGVQQQSHSGPTNGNNMAKNNLGFVGQTPPTSGGGGGSSSGPANNGPVSRSNSFKAASNSDSSAAAGGGSNTGFNQRSSDMPPQNLALQDMASDFANDFADNPFFNSDLDDNMGFNWKT* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2424 880 MobiDBLite consensus disorder prediction 791 831 - -
Psa1g2424 880 MobiDBLite consensus disorder prediction 648 678 - -
Psa1g2424 880 Coils Coil 256 281 - -
Psa1g2424 880 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 729 878 - -
Psa1g2424 880 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Psa1g2424 880 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 167 721 - -
Psa1g2424 880 MobiDBLite consensus disorder prediction 648 676 - -
Psa1g2424 880 MobiDBLite consensus disorder prediction 128 178 - -
Psa1g2424 880 MobiDBLite consensus disorder prediction 690 722 - -
Psa1g2424 880 Pfam LIM-domain binding protein 304 565 IPR029005 -
Psa1g2424 880 PANTHER LIM DOMAIN-BINDING PROTEIN 167 721 IPR029005 -
Psa1g2424 880 PANTHER LIM DOMAIN-BINDING PROTEIN 729 878 IPR029005 -
Psa1g2424 880 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2424 Psa-Chr1 201486488 201492854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2424 289 574 C2H2 Transcription Factor Family AT1G43850 54.196 5.94e-100 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2424 - - gmx:100816886 1097.03