Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2420 ATGGAAGAAAACAAGAAGTGGATGCATAAAGAGACTGAAAGACAAAGAAGACAAGAGATGGCTAACCTCTGCACCAACCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAGCGCTCGATTTCGGATCATGTGAATGAGGCTATGAATTACATCAACCACCTACAAACCAAGGTAAAGCAGTTAGAAGCTAAGAAGGAAGAGTTAACGAAGAAGATGTCTAGTTTGAATACAAATGTCCCTCAAAATGACTCTAGTAGTAGTTCTACCAATCTTCAACCTTGTGTTATTGTTCAACCTTTCCCTGGAGGAATTGAGATTGTGTGCAGTTACAGCTTCAACAAGTGTTTGTTTCCTTTGTCAAAAGTGCTTTTCGTGGTGATTAATGAAGGGCTTAATGTTATAAGCTGTACTTCCAACACAATAGATGGCAGATTCATATACACCATACGATCTGAGGATCCGACAATGACTGGCATTGATTACTCTGAACTGCAAAGAAAGCTTACAGAAGCAATATCATCTTCAAGTTTACCAGAGAGTTCATCAGAACCAGAAAATTGGCAATATCTTGAGAAAAATGTATATTTTGAAAGCTTCTGA 606 0.3779 MEENKKWMHKETERQRRQEMANLCTNLRSLLPLEYIKGKRSISDHVNEAMNYINHLQTKVKQLEAKKEELTKKMSSLNTNVPQNDSSSSSTNLQPCVIVQPFPGGIEIVCSYSFNKCLFPLSKVLFVVINEGLNVISCTSNTIDGRFIYTIRSEDPTMTGIDYSELQRKLTEAISSSSLPESSSEPENWQYLEKNVYFESF* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2420 201 CDD bHLH_AtORG2_like 5 72 - -
Psa1g2420 201 Gene3D - 1 87 IPR036638 GO:0046983
Psa1g2420 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 82 IPR036638 GO:0046983
Psa1g2420 201 SMART finulus 10 62 IPR011598 GO:0046983
Psa1g2420 201 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Psa1g2420 201 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 182 IPR015660 GO:0003700|GO:0006357
Psa1g2420 201 PANTHER TRANSCRIPTION FACTOR 1 182 - -
Psa1g2420 201 Coils Coil 46 80 - -
Psa1g2420 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2420 Psa-Chr1 200853173 200855836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2420 9 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.237 2.41e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g2420 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2420 - - ccaj:109791323 244.202