Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2416 ATGGATAATCCTTCCACCAATGAAAGTTCCAACATTTCTTCTATTCATTTAGAGTCTGCTTCAAACCGAAAACCAACCCCTCTCATTAAGATGATAGCAGTTGCTTCCATCGCAGCCGGTATCCAGTTTGGTTGGGCCCTACAGCTATCTTTGCTAACACCATACATCCAGCTGCTTGGCGTCCCACATAAATGGGCAGCCAATATCTGGCTGTGCGGCCCAATTTCTGGCATGATCATCCAACCGATCGTCGGTTACTACAGTGATCGGAACCGTTCTCGTTTCGGTCGCCGCCGTCCATTCATCTTCTTCGGCGCCATTGCCGTCGCGGTCGCAGTCTTTCTCATCGGGTTCGCTGCTGATATCGGTCACTCATTCGGCGACGATCTCAAGAAGAAAACACGACCCAAAGCGGTTGTCATCTTTGTATTTGGTTTCTGGATACTCGACGTCGCTAATAACATGCTCCAAGGACCATGTCGTGCCTTCATCGGGGACCTCGCTGCTGACGACCATAGAAGAATGAGAACCGGTAATGCTCTGTTCTCATTCTTCATGGCAGTAGGTAATGTCCTTGGTTATGCCGCGGGCTCTTACCGTAAGCTCTTCATGATGCTCCCTTTCACAAAAACCGAAGCTTGCAACGAGTTTTGCGCAAATCTTAAAACTTGTTTCTTCATTGCAATATTTCTCCTTATCTTACTTTCAACCTTCGCTCTTCTTTACGTAGAAGACATCCCGTTACCATCAATAGAATCACAATCGCAGACGCAAACACAGACACAGTCGGAACCAGAACAACAGGTTTCGTGTTTCGGAGAGATACTAGGTGCATTCAACGGACTACAAAAACCGATGTGGATGTTAATGTTAGTGACAGCTATAAACTGGATAGCTTGGTTCCCATTTTTCTTGTTTGACACTGATTGGATGGGTCACGAAGTGTACGGCGGCAATCCCGGAGACGATGCTTACAACCGTGGCGTCCGTGCCGGAGCAATGGGACTCATGATCAATGCTGTTGTGCTTGCTTTAATGTCGTTAGCGGTGGAGCCATTAGGGCGTTTTGTGGGGGGTGCAAAGAGACTTTGGGGGATTGTGAATATTATTCTTGCAGTTGGACTTGCCATGACTATAGTCATTACCAAGGCAGCTCAGCATGAACGCCACGTCAGCAATGGTAATACGCCTTCGGCTGGTATTTCGGCTGCCTCGTTCGCTTTCTTCGCTCTCCTGGGAATCCCTCTTGCGATTAATTTCAGTGTCCCATTTGCTTTAGCATCTATTTACTCCAGTGCTTCTGGGGCTGGACAAGGTTTATCTTTGGGAGTTCTCAATATTGCAATTGTGGTTCCACAAATGATAGTATCCGCATTGAGTGGACCATGGGACTCTCTGTTTGGCGGAGGCAACTTACCGGCGTTTGTGGTCGGTATCGGGGCGGCCGTCATCAGTGGTGTATTAGCAATTATTATTTTACCTACCCCAAAGGCAACCGATGTGGCCAAGGTTCCAATTGCGGGTGGATTTCATTAG 1536 0.4779 MDNPSTNESSNISSIHLESASNRKPTPLIKMIAVASIAAGIQFGWALQLSLLTPYIQLLGVPHKWAANIWLCGPISGMIIQPIVGYYSDRNRSRFGRRRPFIFFGAIAVAVAVFLIGFAADIGHSFGDDLKKKTRPKAVVIFVFGFWILDVANNMLQGPCRAFIGDLAADDHRRMRTGNALFSFFMAVGNVLGYAAGSYRKLFMMLPFTKTEACNEFCANLKTCFFIAIFLLILLSTFALLYVEDIPLPSIESQSQTQTQTQSEPEQQVSCFGEILGAFNGLQKPMWMLMLVTAINWIAWFPFFLFDTDWMGHEVYGGNPGDDAYNRGVRAGAMGLMINAVVLALMSLAVEPLGRFVGGAKRLWGIVNIILAVGLAMTIVITKAAQHERHVSNGNTPSAGISAASFAFFALLGIPLAINFSVPFALASIYSSASGAGQGLSLGVLNIAIVVPQMIVSALSGPWDSLFGGGNLPAFVVGIGAAVISGVLAIIILPTPKATDVAKVPIAGGFH* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2416 511 TIGRFAM GPH_sucrose: sucrose/H+ symporter 27 498 IPR005989 GO:0005887|GO:0008515|GO:0015770
Psa1g2416 511 Pfam MFS/sugar transport protein 34 299 - -
Psa1g2416 511 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 11 499 - -
Psa1g2416 511 SUPERFAMILY MFS general substrate transporter 31 498 IPR036259 -
Psa1g2416 511 CDD MFS_SLC45_SUC 31 490 - -
Psa1g2416 511 PANTHER SUGAR TRANSPORTER 11 499 - -
Psa1g2416 511 Gene3D MFS general substrate transporter like domains 29 493 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2416 Psa-Chr1 200389036 200393509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2416 1 511 Sucrose Transporter Gene Family AT1G22710 60.000 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2416 K15378 - gmx:100782007 642.884