Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2413 ATGTTTACAACTAACAACTCTTCCTCCAACACATCATTGCCAAATTTAGAGGTCTCTCGTGAGATGTCAGTTTTCGACGAAGATGTGCGGTTAGCTGCGAGTACACCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTACAGGGGTGTGAGGAAGAGAAACTTAGATAAATGGGTCTGTGAAATATGGGAGCCTAACAAGAAAACTAAGATTTGGTTAGGGACATTTCCAACCGCCGAGATGGCAGCCCGAGCACACGATGTTGCCGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCAAGGTGGCGGCTCCCTAAGCCAGCTAGTACTGAGGCAAAAGATATACAAAAGGCGGCCACAGAAGCCGCCGAAGCTTTCAGACCAAACCAGACTTTACCGACTAATGATATTGACGAGACTTTAACGGTTAATGACATTGACACGACGGTTGTTGCCGCTGCAGGTGCCACAGAAGAGCAGAATATGTTTTCCATGGAAGTGGAAGAAGAGGAGGTGATGAACACACCAGAGATGTGGAGGAATATGGCGATAATGTCCCCTACACATAGCTTCGAGTATGAGTATGAAGATATTAATGTACAAGACTTTCAAGATGAAGAAGAGGATTTTAAAATATGGTTTGTAACCATAGTTTGGGATCTGACATTAAATTTGTTCATGTCTCTGCAATTTATATGCTCAGCAATTTCATTCTGA 750 0.4507 MFTTNNSSSNTSLPNLEVSREMSVFDEDVRLAASTPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEIWEPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSRWRLPKPASTEAKDIQKAATEAAEAFRPNQTLPTNDIDETLTVNDIDTTVVAAAGATEEQNMFSMEVEEEEVMNTPEMWRNMAIMSPTHSFEYEYEDINVQDFQDEEEDFKIWFVTIVWDLTLNLFMSLQFICSAISF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2413 249 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Psa1g2413 249 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Psa1g2413 249 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Psa1g2413 249 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Psa1g2413 249 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Psa1g2413 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 233 IPR045277 GO:0003700
Psa1g2413 249 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Psa1g2413 249 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Psa1g2413 249 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 233 - -
Psa1g2413 249 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2413 Psa-Chr1 199799962 199802755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2413 23 224 AP2-EREBP Transcription Factor Family AT4G25470 51.961 3.03e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2413 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2413 - K09286 mtr:MTR_6g465460 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g2413 1 199799962 199802755 Psa6g4600 6 399950566 399951993 PCT