Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2407 ATGGCAGATCTTGGTTATCACAGAAACTCAAAAAAATGCAAAGAAAAATTTGAGAATGTTTACAAGTATCACAAGAGAACCAAAGAAGGAAGAGGTGGAAAATCAGAAGGTAAAACTTATAGATTTTTTGATCAATTACAAGCCCTTGAAAATAATCCTTCAATTCAATCACCAAGAACACAAACACAATTGAATATTTCTACATTACCTCCAACAACACCTTCATCATCATCATCATTACCAATTTCAACTACATCAACTACACTTACAACCACAAATCCATTGCTATTGCCACCCTCATTGTTAAACTCTACATCTCCCATTACTATTCACACCCCTTCCATCACCACCACCGCGGCGGCCACCACTGTTCCATTGACAACTACAATTACACCACCAATTCCAATGTCTTTACCTCAAGTTCAAAACACTGTCTCACAATCCAACCCTACATATTTTCCACCCATACCATCCACAACAACAGCAACAAATCCTACAAATACTAATAACCCTCTTCCTCAAATTACCATTACACCCCCACCATCTTCATTTCCGAACACTTCAACTGATTTCTTCTCGAATTCGAGTTCATCTTCAACTTCTTCGGAGGAAACAATGACGATGGAAGGTGGGGGAAACCGGCGGAAACGGAAGAGGAAATGGAAGGATTTCTTTGAGAGACTAATGAAGGAAGTTGTTGAGAAACAAGAGGAGCTGCATAAGAGATTCTTGGAAGCTATTGAGAAAAGAGAATTAGAGAGAGGTGCTAGAGAAGAAGCTTGGAGGTTGCAAGAGATGCAAAGGATTAATAGAGAAAGAGAAATTCTTGCTCAAGAGAGATCTATTGCTGCTGCTAAAGATGCTGCTGTTATGGCTTTTTTACAAAAGATTGCTGATCAACAACAAGAACAACAACAAAATATTGTTGTTCCTGTTGCATTGAATACCAATATTGTTCCTCAACAACAACAAGCGCTACAAGAACCGACATCAACACCAACACCAGCGCCAGCGTCAACCCCAACACCAGCACCAACGCCAGTGCCAGCGCCAGCGCTAACATCAGCTCCAGCACCAATGCAAACACCAACACCAATGCCGTTGCCGATGCCAATACAATCACAGCAACAAGTTCAAACTCCGACTTCGGCAGTGCAAGTGCAACAAACAGCACCGGTTATTTCTCAGGCTTTACCGTTGGCGCAACCACAACAGGCTCAGGTTCAAGTTCAGCAGCAAGCGACGAACATGGACATTGTGAAAAGTGATAACAATGGTGAGAGTTTGATGCAAGCAAGTTCATCAAGGTGGCCAAAGACCGAGGTTGAGGCATTGATAAGGCTGAGAACAACTCTTGATATGAAGTACCAAGAAAATGGACCTAAAGGGCCATTATGGGAGGAAATTTCAGGGTTGATGAAGAATCTGGGGTACAATAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAATATCAACAAATATTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGGCCGGAAGATTCGAAGACTTGTCCGTATTTTCACCAACTCGATGCTCTATATCGGGAGAAGAACAAGGGCGAGGGCTCCAGCGCGTCAAGGCCCGAGGGAACCATGATGGCGCCATTGATGGTGCGGCCAGAGCAGCAATGGCCTCCACAGCCACAGCCGCCACCAGTAACTAGGGCGGATGTGACCATGGAGGATGCTGAAAATGACCGGCCGCGCCGTGATGATGAAGAGTATTACGACGATGACGAAGGTGATGAAGAAGACGAAGACGAAGGAAGTGACAACTATGAAGTGGTTGCAAACAAACCACCACCACCTCAATAA 1842 0.4376 MADLGYHRNSKKCKEKFENVYKYHKRTKEGRGGKSEGKTYRFFDQLQALENNPSIQSPRTQTQLNISTLPPTTPSSSSSLPISTTSTTLTTTNPLLLPPSLLNSTSPITIHTPSITTTAAATTVPLTTTITPPIPMSLPQVQNTVSQSNPTYFPPIPSTTTATNPTNTNNPLPQITITPPPSSFPNTSTDFFSNSSSSSTSSEETMTMEGGGNRRKRKRKWKDFFERLMKEVVEKQEELHKRFLEAIEKRELERGAREEAWRLQEMQRINREREILAQERSIAAAKDAAVMAFLQKIADQQQEQQQNIVVPVALNTNIVPQQQQALQEPTSTPTPAPASTPTPAPTPVPAPALTSAPAPMQTPTPMPLPMPIQSQQQVQTPTSAVQVQQTAPVISQALPLAQPQQAQVQVQQQATNMDIVKSDNNGESLMQASSSRWPKTEVEALIRLRTTLDMKYQENGPKGPLWEEISGLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKGEGSSASRPEGTMMAPLMVRPEQQWPPQPQPPPVTRADVTMEDAENDRPRRDDEEYYDDDEGDEEDEDEGSDNYEVVANKPPPPQ* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2407 613 MobiDBLite consensus disorder prediction 192 215 - -
Psa1g2407 613 MobiDBLite consensus disorder prediction 322 346 - -
Psa1g2407 613 Pfam Myb/SANT-like DNA-binding domain 1 49 IPR044822 -
Psa1g2407 613 Pfam Myb/SANT-like DNA-binding domain 435 522 IPR044822 -
Psa1g2407 613 ProSiteProfiles Myb-like domain profile. 435 493 IPR001005 -
Psa1g2407 613 CDD GT1 435 500 - -
Psa1g2407 613 MobiDBLite consensus disorder prediction 584 600 - -
Psa1g2407 613 MobiDBLite consensus disorder prediction 69 91 - -
Psa1g2407 613 MobiDBLite consensus disorder prediction 568 583 - -
Psa1g2407 613 SMART sant 433 495 IPR001005 -
Psa1g2407 613 MobiDBLite consensus disorder prediction 192 208 - -
Psa1g2407 613 MobiDBLite consensus disorder prediction 546 613 - -
Psa1g2407 613 PANTHER - 1 606 - -
Psa1g2407 613 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 606 - -
Psa1g2407 613 Gene3D - 437 498 - -
Psa1g2407 613 Gene3D - 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2407 Psa-Chr1 198411075 198414894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2407 1 63 Trihelix Transcription Factor Family AT1G76880 73.016 8.90e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa1g2407 Myb_DNA-bind_4 3.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2407 - - gmx:100804788 387.111