Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2395 ATGGCTTACTCTAAAGTTCTCTTTTTCTATATCCTTGTTATTTTCCTCTATTTTGCAACTATCAAGGCACAAAACTCTCCATTTTTTCTGAAGAGAAATTGTTCCCCCAAAGTTACCACAACCAACAGCCTCTTCCAAAGCAATCTCATGACCCTACTTTCTTCCTTGTCTTCAAAAGCCACCGGAAACATCGAATTCTACAACTTCACAGTCACTGGTATAAACCCCTCTGATTCTGTCTATGGACTGTTCATGTGCAGAGGGGATGTACCCTCTATGGTCTGTCATGAATGCATAGATGATGCAATCAAGCAACTATCCTCCCTGTGTTCTTTCTCCAAACAAGCTGTGATTTGGTACAACGAGTGCATGCTTCGATACTCCGACTACTACTTCTTTTCAACCGCCGACAAGTCTGGTTTTTCCTTAACTAATACGGCCGATGTCTCCAACACGAAAGCCTTCATTCGTTTATTGTTACCTTTCATGAATCAAACTGCAGATGAAGCAGCACGTCCACTTTCCGGTGTCAAGAACAAAAAGTTTGCGACAACTGAAACACGAGTTTCGGAATCTGAAACTCTTTACTGTCTTGCTCAGTGCACGCCGGACTTGTCACCAAATGATTGCAGAACCTGTCTAAATAGTGCTATTGAGGAGCTTCCATTGTGCTGTAACGGGAAGGTTGGTGGGAGATATCTTTATCCTAGCTGTAATGTTAGGTATGAACTATATCCTTTTTATAGGTCTAATGATGTTACTTCACCTAATGATCTTGCTCCTCAAACAAATGGTTCAAAACTAGATGATAGATTTTCCCAAGATCCATTTTATCTTTCTTATAATTGCTCAAGTAACCAGAATACAATCTCTTCCAAAAACTTCAAATTACTTCTCACTGATTTGTCATCCAACGCCGCACGCGGCTTGAAATTTCATACAAGTAATGTGGTCGACACGGTGTACGGCCTCTTCATGTGTCGAGGCGACCTTCAAACCCACCTCTGTGCTGCATGTGTGATAAACGCAACGGACCAAATATACTCGAAGTGTCTTTCATCACCAGAGGGTATAATTTGGTACAGTCACTGCTTGGTTCGCTACTCGAGTCAGTATGTTACTCATAATATGGAAACAAGGCCTATGTACCGCGATATAAATATCACCAATCACTCCATCCCGGACCAAAATTTGTTCACGAGTACGTTATCGAATCAGTTATCTGAACTTGCAAATAAAACAGGAAACAATGATGTAAAATACATGACAAATTCATTAAAGTTGAATGATAAACAAACCTTGTATACTCTTGAACAATGTTCGCCAAATTTGTCGAATCAGGAATGCATTTCATGTTTAAATGATGTGATAAGTAGAGCAATTCCATGGTCATTTTTGGGAAGTGTTGGGGGAAGAATTATATATCCTAGCTGCAATCTCAGGTTTGAATTGTTCCAGTTTTACATGGAGGCCGGTGACGAAGATCAGCCACCTGGGATTCCTTCTCCATTATCAAGAAATACAGAGAAACGGACAATTATCTTCATTGTTGTGTCGATCATTATTTTGGTGATCCTCTTTTCTATTGGCTACTACTTTCTAAAGAGAAGGGGAAGAAAGAGTCGTAGGACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCCACTTTAGAACCATTGCAATTTGATTGGATGGTAATTGAAGCAGCAACGAACAATTTTTCTATTGACAATTACATTGGCAAAGGCGGTTTTGGAGAGGTTTATAAGGGTATTCTTTTTGATGGACGAGAAGTAGCTATAAAGAGACTCTCCGAAAGATCTAAACAAGGCATAGAGGAGTTTAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTAGTTACATTTATTGGGTTTTGCCTTGAACAACATGAGAAAATACTTATTTATGAGTTTGTGCCCAATAAAAGTCTTGATTACTTTTTATTTGATTCTCAACAGCAAAAGTTGTTAACTTGGATTGAACGTTTTAACATCATAGGAGGAATTGCTCGAGGAATTCTTTATTTGCACGAACATTCTCGACTCAAAGTTATACACCGGGATCTCAAGCCTAGCAATATTCTTTTAGATGAAAATATGATTCCTAAAATTTCAGATTTTGGTTTGGCTCGAATTGTTGAAATAAGTCAAGACGAAAGAAGTACCAAGAGAATTGTCGGAACATATGGCTATATATCTCCAGAGTATGCAATGCTTGGACAATTTTCTGAAAAATCAGATGTTTATAGTTTTGGAGTCATGATTTTAGAGATTGTTGCTGGAAAGAAGAATATAAGTTCATCTGCACCACAATCAGTTGTTGACGGCCTCTTGAATTATGTAAGTGTAACATATTAA 2391 0.3823 MAYSKVLFFYILVIFLYFATIKAQNSPFFLKRNCSPKVTTTNSLFQSNLMTLLSSLSSKATGNIEFYNFTVTGINPSDSVYGLFMCRGDVPSMVCHECIDDAIKQLSSLCSFSKQAVIWYNECMLRYSDYYFFSTADKSGFSLTNTADVSNTKAFIRLLLPFMNQTADEAARPLSGVKNKKFATTETRVSESETLYCLAQCTPDLSPNDCRTCLNSAIEELPLCCNGKVGGRYLYPSCNVRYELYPFYRSNDVTSPNDLAPQTNGSKLDDRFSQDPFYLSYNCSSNQNTISSKNFKLLLTDLSSNAARGLKFHTSNVVDTVYGLFMCRGDLQTHLCAACVINATDQIYSKCLSSPEGIIWYSHCLVRYSSQYVTHNMETRPMYRDINITNHSIPDQNLFTSTLSNQLSELANKTGNNDVKYMTNSLKLNDKQTLYTLEQCSPNLSNQECISCLNDVISRAIPWSFLGSVGGRIIYPSCNLRFELFQFYMEAGDEDQPPGIPSPLSRNTEKRTIIFIVVSIIILVILFSIGYYFLKRRGRKSRRTILRENFGEESATLEPLQFDWMVIEAATNNFSIDNYIGKGGFGEVYKGILFDGREVAIKRLSERSKQGIEEFKNEVLLIAKLQHRNLVTFIGFCLEQHEKILIYEFVPNKSLDYFLFDSQQQKLLTWIERFNIIGGIARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDERSTKRIVGTYGYISPEYAMLGQFSEKSDVYSFGVMILEIVAGKKNISSSAPQSVVDGLLNYVSVTY* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2395 796 Gene3D Phosphorylase Kinase; domain 1 537 649 - -
Psa1g2395 796 Pfam Salt stress response/antifungal 288 370 IPR002902 -
Psa1g2395 796 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Psa1g2395 796 Pfam Salt stress response/antifungal 394 483 IPR002902 -
Psa1g2395 796 Pfam Salt stress response/antifungal 152 245 IPR002902 -
Psa1g2395 796 Pfam Protein kinase domain 576 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2395 796 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Psa1g2395 796 Gene3D Transferase(Phosphotransferase) domain 1 650 794 - -
Psa1g2395 796 ProSiteProfiles Gnk2-homologous domain profile. 273 373 IPR002902 -
Psa1g2395 796 ProSiteProfiles Gnk2-homologous domain profile. 137 247 IPR002902 -
Psa1g2395 796 SUPERFAMILY Protein kinase-like (PK-like) 556 785 IPR011009 -
Psa1g2395 796 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Psa1g2395 796 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 267 492 - -
Psa1g2395 796 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 256 - -
Psa1g2395 796 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 503 791 - -
Psa1g2395 796 ProSiteProfiles Gnk2-homologous domain profile. 379 487 IPR002902 -
Psa1g2395 796 SMART serkin_6 574 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2395 796 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 503 791 - -
Psa1g2395 796 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 256 - -
Psa1g2395 796 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 267 492 - -
Psa1g2395 796 CDD STKc_IRAK 580 792 - -
Psa1g2395 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Psa1g2395 796 ProSiteProfiles Protein kinase domain profile. 574 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2395 796 Gene3D - 277 372 IPR038408 -
Psa1g2395 796 Gene3D - 138 247 IPR038408 -
Psa1g2395 796 Gene3D - 382 487 IPR038408 -
Psa1g2395 796 Gene3D - 27 132 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2395 Psa-Chr1 194882850 194886807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2395 273 792 Receptor kinase-like Gene Family AT4G05200 45.956 5.31e-148 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g2395 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2395 - - mtr:MTR_6g055960 1078.54