Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2392 ATGGAAGAAAGAGAGATTTTTGGTTCTGGGCAGGGTGTTAATGTTAATCAGGTCCCACAGGGGTTCAACTTGGGTCAAAATCAAAATTCGTTGAGTTTTTCTGGGCCCACTGGTGAGGTTCCGGCTACTGTTCCGGTGAGTGCGCGGGGTGGCGGTGGTATGGAGATGAAGAAGAAGAGAGGTAGGCCTAGGAAGACTGAATCTGGAAATGATACAACAGCTCCACCTAGTTCCAATTTCAAAACCCATGTGCTTACGGTAAAGTCCGGAGAGGATCTATCGATGAAAATAATGTCTCTCTCCCAACAAGAACATCATACTATATCCATTCTCTCTGCAACTGGCACAATTTCGAATGTCACACTTCGCCAGTCGGATGCTTGTGGAGGTACTTCGACATATGAGGGAGTTTTTGAAATTCTTTCCTTAAGCGGATCATTTGTTCCAACCGAGAATGGATTGACAAAGAGCCGAGCTGGAAGAATGAGTGTCTCTTTGGCAGGTCCAAATGGCCGTGTTTTCGGAGGCGCGCTCGCTGGTTTGCTCGTAGCTGCTGGTTCTGTGCAGGTCGTGGTTGCGAGTTTTCTTCCCGATCAGCCGAAACCGAAGAAGCAACGGATCGATCACATGTCACCAACCGCCCCTCCTACATCATCTCATATCAACAATCATGCATCCGAAGAATTGAAAACCACCGATCTCGGTGGAATGAAGCCTATCATGTCACCTGCCGGATTCAACTTTGCTTCATTCGGTAATGGCCAGGGCTCAGGCAACTCATCATCATCCGGCGATGATGACGAGCATGTCCAGCCCTAG 819 0.4847 MEEREIFGSGQGVNVNQVPQGFNLGQNQNSLSFSGPTGEVPATVPVSARGGGGMEMKKKRGRPRKTESGNDTTAPPSSNFKTHVLTVKSGEDLSMKIMSLSQQEHHTISILSATGTISNVTLRQSDACGGTSTYEGVFEILSLSGSFVPTENGLTKSRAGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFLPDQPKPKKQRIDHMSPTAPPTSSHINNHASEELKTTDLGGMKPIMSPAGFNFASFGNGQGSGNSSSSGDDDEHVQP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2392 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 198 - -
Psa1g2392 272 MobiDBLite consensus disorder prediction 10 37 - -
Psa1g2392 272 CDD DUF296 81 195 IPR005175 -
Psa1g2392 272 Gene3D - 81 209 - -
Psa1g2392 272 MobiDBLite consensus disorder prediction 53 67 - -
Psa1g2392 272 MobiDBLite consensus disorder prediction 246 272 - -
Psa1g2392 272 ProSiteProfiles PPC domain profile profile. 76 217 IPR005175 -
Psa1g2392 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 77 248 IPR039605 GO:0003680
Psa1g2392 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 77 248 - -
Psa1g2392 272 MobiDBLite consensus disorder prediction 248 272 - -
Psa1g2392 272 MobiDBLite consensus disorder prediction 1 78 - -
Psa1g2392 272 MobiDBLite consensus disorder prediction 200 224 - -
Psa1g2392 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 195 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2392 Psa-Chr1 194779633 194782377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2392 79 214 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 63.636 1.36e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2392 - - cam:101510032 300.827