Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2386 ATGGCCTCTGTAAAACCACTATGCCATTTCCACCTTCCCCTCTCTTCTTCATCTTCTTTCTTCAGAATTCGAAAACCAACACACTCACTCTCACTCTCACCGCGTCTTCTCAATCGCCCCATCCAATTCCAATCCAAAACCCTATCTCCTCCTCATCGTATTCATCTTCTCCCCCAACCGCTACATGCTTACGTTACCGGACCCGCATCCGACCCGAATATCGCCGACACGGATCCGAAACTCGACGGGCTGCGGCAAGAGGATTCACCCACACCCAGGGTTGTAACATGGGAGCTTCTCTCTATGCTTCTCATGAAGCACAAATTTCGTCTTGCTCTTTGTGTTGCTTCTCTCTTTGCCTGTACCACCTGTACCCTATCCATGCCCATTTTTTCAGGGCGGTTTTTTGAAGTTCTTATTGGTGTTAGACCCGAGCCGTTGTGGAGTCTTCTCAGTAAAATGGGAGTTCTGTATGCTCTAGAGCCAATTTTTACAGTTATTTTTGTAATAAACATGAACATAGTGTGGGAGAAAGTTATGTCAACGCTAAGAGCTCAGATCTTCGGAAGACTATTGATTCAGAAGGTTGAGTTTTTTGACAAATACAAGGTAGGTGAAATCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAAACATCGTCGGTGAGAATGTTTCAAGGGATCGAGGATTCAGGGCATTATCTGAGGTCACTGGGACAATATTCATACTTTTTACTTTATCCCCTCAACTAGCTCCAATTCTGGGTGTTCTGATGATCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTAAAGCACATGGGTTGGCCCAAGCTTCTATATCTGATTGTATAACAGAAACATTTTCTGCTATTCGAACAGTGCGATCCTTTAGTGGAGAAAAGCGGCAAATGTTTATGTTTGCTAGCCAGGTTCTATCCTTCGAATCGAGTGGTATAAAGCTTGGAACTTTCAAATCTATAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAACTGCGCTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCCGTTGGAACTATGGCATCTTTTATTGGATATACTTTCACTTTAACATTCGCAGTTCAAGGATTGGTTAATACTTTCGGAGATCTTCGTGCAAGTTTTGCGGCTGTTGAGAGGATCAACTCTGTTCTTTCTGGAGTTCAAGTTGATGACGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAGGCGGTGAACGATGAGAACTATAAATTGTTCTTCTCTAATAGTTCTGACGAAAATAACCAAAACAGCCATTTGCATTACATGTCAGCATTAAAAACATCAAGCAATGTGTTTAGTTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTGTATTTCTCTTACCCTTTAAGGCCAGATGTGGAAATTTTACACGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTGCTAGTGGTGCAGGAAAAAGTACGATTGTACAGCTATTGTCTCGTTTTTATGAGCCAACAAGAGGTTGTATAACAGTTGGTGGAGAGGATGTCCGGACATTTGACAAAAGCGAATGGGCTCGGGTTGTCTCTATCGTAAATCAAGAACCTGTTTTATTTTCGGTCTCTGTTGGAGAAAATATTGCATATGGACTGCCAGACGACGATGTTTCGAAAGACGATGTGATCAAGGCAGCAAAAGCAGCAAATGCTCATGACTTTATAATTTCACTTCCTCAGGGCTATGATACACTTGTTGGTGAACGCGGAGGCCTACTGAGTGGGGGACAGAGGCAGAGAGTCGCCATTGCCCGAGCTCTCCTGAAGAATGCTCCCATCCTAATACTTGATGAGGCTACAAGTGCTCTGGATACCGTCAGTGAACGCTTGGTCCAAGATGCTCTCAACCATTTGATGAAGGGGAGGACAACATTAGTCATAGCTCACAGGTTAAGCACAGTTCAAAATGCTTATCAAATTGCACTATGTTCAGATGGGAGGGTTGCAGAACTAGGCACTCATTTTGAGCTGTTAGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACTCAAAGGCTTGCATTTGAATAA 2151 0.4272 MASVKPLCHFHLPLSSSSSFFRIRKPTHSLSLSPRLLNRPIQFQSKTLSPPHRIHLLPQPLHAYVTGPASDPNIADTDPKLDGLRQEDSPTPRVVTWELLSMLLMKHKFRLALCVASLFACTTCTLSMPIFSGRFFEVLIGVRPEPLWSLLSKMGVLYALEPIFTVIFVINMNIVWEKVMSTLRAQIFGRLLIQKVEFFDKYKVGEITGLLTSDLGSLKNIVGENVSRDRGFRALSEVTGTIFILFTLSPQLAPILGVLMIAVSISIAVYKRSTLPVFKAHGLAQASISDCITETFSAIRTVRSFSGEKRQMFMFASQVLSFESSGIKLGTFKSINESLTRVAVYISLTALYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRASFAAVERINSVLSGVQVDDALAYGLERELKQKAVNDENYKLFFSNSSDENNQNSHLHYMSALKTSSNVFSLAWSGDICLEDVYFSYPLRPDVEILHGLNLRLKCGTVTALVGASGAGKSTIVQLLSRFYEPTRGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRVAIARALLKNAPILILDEATSALDTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRVAELGTHFELLAKKGQYASLVGTQRLAFE* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2386 716 Gene3D ABC transporter type 1, transmembrane domain 80 409 IPR036640 GO:0005524|GO:0016021
Psa1g2386 716 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 42 714 IPR039421 -
Psa1g2386 716 ProSitePatterns ABC transporters family signature. 613 627 IPR017871 GO:0005524
Psa1g2386 716 CDD ABC_MTABC3_MDL1_MDL2 472 711 - -
Psa1g2386 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 711 IPR027417 -
Psa1g2386 716 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2386 716 CDD ABC_6TM_TAP_ABCB8_10_like 117 403 - -
Psa1g2386 716 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 42 714 - -
Psa1g2386 716 Gene3D - 470 713 IPR027417 -
Psa1g2386 716 Pfam ABC transporter transmembrane region 112 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2386 716 SMART AAA_5 499 673 IPR003593 -
Psa1g2386 716 SUPERFAMILY ABC transporter transmembrane region 100 403 IPR036640 GO:0005524|GO:0016021
Psa1g2386 716 Pfam ABC transporter 490 641 IPR003439 GO:0005524
Psa1g2386 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 472 710 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2386 Psa-Chr1 194260532 194266180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2386 469 716 Calmodulin-binding Proteins AT2G36910 53.785 6.69e-74 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2386 K05657 - gmx:100791034 1137.87