Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2366 ATGGAACAGAAACATGTTTTTTTGTCAGCATTGAGTGTTGGTGTTGGATTAGGTGTTGGACTTGGATTGAGTTCAGGACAAGCTGTTCAGAAATGGGTTGGTGGGAATCGTGATTTTGGGGAGGTTTCTGGGGACCAAATTGTTGAAGAGCTTAAGAGACTTTTGGTTGATGGAAAAGATAGCAAAGTTACATTTGATGAGTTTCCTTATTACTTAAGCGAAAGGACTCGAGTTTTGTTGACGAGCGCTGCATATGTTCATTTAAAACATCTTAACTTTTCCAAGCATACAAGGAACCTCTCACCAGCAAGCCGGGCTATTTTACTCTCTGGTCCAGCAGAACTTTATCAGCAAATGCTTGCAAAAGCTTTAGCACATTACTTTGAATCGAAGTTGCTATTGTTAGATGTAACTGATTTCTCCGTGAAGTTGCAGAGCAGATTTGGATATCCGAGAAAAGAACCATGTTTCAGAAGGTCGATATCCGAGGTGACTTTGGAGCGAATGTCTGGTTTATTTGGTTCCTTTTCAACGCTGTCTTCGACCGGCGAAACTCGAGGAACTCTGCATCAACAAAGCGGTGAAAGTTCGAATAATCTTCCAAGGCTTCGGAGGAATGCCTCTGCCATGTCTGATCTAAGTAGCACTTCTTCCCAAAGTGGTTCATTAAATCCAGCTCCTCTACGACGCACAAGTAGCTTGTGTTATGACGAAAGACTCTTCGTGCAATCACTTTACAAGGTTTTGGTTTCTATCTCGGGAACCGATTCCGTAATTTTATATATAAGGGATGTTGAGAAGCTTCTTCTAAAATCACCGAGGTTATATAATTTACTACAAAAAATGATAAAGAAAATATCAGGCTCGGTGTTGATACTCGGTTCCCAAATATTAGATTTAGAAGACGAATGCAAAGAAATCGACGAGAGGATCACTAGCTTATTCCCTTACAACATCGAGATCAAAGCACCTGAAGACGAAACTCATCTCGGTAGCTGGAAAGGCCAACTCGAAGAGGACATGAAAGTAATTAAGTTTCAAGATACTCGAAACCACATCGCCGAAGTACTCACTGAAAACGACATTGATTGCGACGACTTGAATTCTATATGCCATGCAGATACTATGATACTTAGTAATTATATAGAAGAAATCGTTGTGTCTGCAATTTCTTACCATTTGATGAATACCAAAGAACCAGAATACCGAAACGGAAAGCTTGTAATCTCATCCAATAGTTTGTCCCATGGATTGAGTCTTTTCCAAGAAGGAAAGAGTAGTGGAAATTTGAAGACTAATGATTCTAATAAGGAAAATGCTGTTAAAGATATTATTGCTGGTACGAAAGCACCTGAGAACAAGAGTGAGACAGAGAAATCGATCCCGGTAACGAAAAAAGAAGGCGAAAATTCTACCCCTGCAAAAGCTGAAGTTCCTGACAACGAGTTCGAGAAGCGAATTAGACCCGAGGTTATCCCTCCAAATGAGATAGGAGTTACATTCACAGATATCGGCGCATTGGATGAGATAAAAGAGTCACTTCAAGAACTCGTCATGCTTCCCCTTAGAAGACCGGACCTTTTCAAAGGCGGGCTTCTAAAGCCATGTAGAGGTATATTACTTTTTGGGCCACCCGGTACCGGAAAAACAATGCTAGCAAAGGCGATTGCGAATGAAGCAGGAGCAAGTTTCATTAACGTCTCAATGTCCACCATCACTTCGAAATGGTTCGGAGAAGACGAAAAGAATGTCCGAGCTTTGTTCACGCTAGCGGCTAAGGTTGCTCCGACTATTATATTCGTTGATGAAGTTGATAGCATGCTCGGTCAACGAACTAGAGTCGGAGAACACGAGGCCATGAGGAAGATTAAAAACGAATTCATGACACATTGGGATGGACTATTGTCCGGACCGAATGAACAAATTCTCGTTCTTGCTGCTACCAACAGACCTTTTGATCTCGATGAAGCAATTATAAGACGGTTCGAACGCAGGATCATGGTTGGTCTTCCATCTGTCGAGAATCGGGAAATGATCCTAAAAACTCTTCTGTCGAAGGAAAAACACGAAAACTTAGACTTCAAAGAACTAGCAATCATGACAGAAGGATTTAGCGGAAGTGATCTTAAGAATTTGTGCATCACCGCAGCTTATCGACCGGTTAGGGAGTTAATACAGCAAGAGAGAAAGAAGGAAATGGAAAAGAAGAAAAAAGAGACCGAAAATGTAAGTTCCGAAGATGCTTCGAAAAATAACGATAGCGAAGAACGAGAAATTATCTTGAGGCCTTTAAGCATGGAAGACGTGAAACAAGCTAAGAATCAGGTGGCTGCAAGTTTTGCGTCAGAAGGATCGGTCATGGGCGAGCTAAAGCAATGGAATGAATTGTACGGAGAAGGCGGTTCAAGGAAGAAACAACAGCTCACATACTTTCTCTAG 2439 0.4149 MEQKHVFLSALSVGVGLGVGLGLSSGQAVQKWVGGNRDFGEVSGDQIVEELKRLLVDGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLNFSKHTRNLSPASRAILLSGPAELYQQMLAKALAHYFESKLLLLDVTDFSVKLQSRFGYPRKEPCFRRSISEVTLERMSGLFGSFSTLSSTGETRGTLHQQSGESSNNLPRLRRNASAMSDLSSTSSQSGSLNPAPLRRTSSLCYDERLFVQSLYKVLVSISGTDSVILYIRDVEKLLLKSPRLYNLLQKMIKKISGSVLILGSQILDLEDECKEIDERITSLFPYNIEIKAPEDETHLGSWKGQLEEDMKVIKFQDTRNHIAEVLTENDIDCDDLNSICHADTMILSNYIEEIVVSAISYHLMNTKEPEYRNGKLVISSNSLSHGLSLFQEGKSSGNLKTNDSNKENAVKDIIAGTKAPENKSETEKSIPVTKKEGENSTPAKAEVPDNEFEKRIRPEVIPPNEIGVTFTDIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHENLDFKELAIMTEGFSGSDLKNLCITAAYRPVRELIQQERKKEMEKKKKETENVSSEDASKNNDSEEREIILRPLSMEDVKQAKNQVAASFASEGSVMGELKQWNELYGEGGSRKKQQLTYFL* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2366 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 372 IPR027417 -
Psa1g2366 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 729 IPR027417 -
Psa1g2366 812 Gene3D - 671 749 - -
Psa1g2366 812 Coils Coil 721 742 - -
Psa1g2366 812 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 812 - -
Psa1g2366 812 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 812 - -
Psa1g2366 812 Pfam AAA+ lid domain 691 734 IPR041569 -
Psa1g2366 812 CDD AAA 537 670 - -
Psa1g2366 812 MobiDBLite consensus disorder prediction 445 481 - -
Psa1g2366 812 ProSitePatterns AAA-protein family signature. 642 661 IPR003960 GO:0005524|GO:0016887
Psa1g2366 812 MobiDBLite consensus disorder prediction 729 760 - -
Psa1g2366 812 MobiDBLite consensus disorder prediction 452 481 - -
Psa1g2366 812 Pfam ATPase family associated with various cellular activities (AAA) 539 669 IPR003959 GO:0005524|GO:0016887
Psa1g2366 812 Gene3D - 498 670 IPR027417 -
Psa1g2366 812 SMART AAA_5 535 672 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2366 Psa-Chr1 192052135 192057984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2366 465 728 Calmodulin-binding Proteins AT3G56690 36.630 5.92e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2366 - - gmx:100817952 1310.82