Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2358 ATGTTGTTTACTAGTGACCCCGTTTCCTCAACCCCTTCATCTTCCTACAACACATCATCATCATCATCAGATTGGGAGATACGGCTAGCAGCGAGTTGCCCCAAGAAGCGAGCTGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTTTATAGGGGCGTGAGGAAGAGGAACTTAGATAAATGGGTATGCGAAATGAGAGAGCCCAACAAAAAGACTAGAATTTGGCTAGGAACTTTCCCAACGGCCGAGATGGCCGCCCGAGCCCACGATGTTGCCGCGATGGCACTGAGAGGCCGCTACGCCTGTCTCAATTTCGCAGACTCGGTGTGGCGACTCCCTATTCCTGCAACCTCTGATACAAAAGATATACAAAAAGCCGCAACAGAAGCTGCCGAGGCTTTCAGACCAGACAAGATTTTAATGACTAAGGACGTGGATAACGCTGTACCGGTCATCCTTGTACCGGTCATCGCAACAGAGAAGTTGAATATGTTTTGTATAGAGGAGGAAGACGAAGTGATGAACATGAACATGCCAGAGTTATGGAGGAATATGGCTCTAATGTCCCCTACACATAGTTTTGGATACCATGAATATGAACATATTGATGTACAAGATTTTCAAGATGACGAGGATTTTAAAAAACATTGTACAATGATTTGGAGCGTGACTGCAATTGGAGTTCATTCGTCGCATTTCGCCGTAATATCAAGGATCATGATCGGTACTGACTGTGAACTCATCGTTGATCTTTGTTTTCTTTTCGGTAAAGAAAAGTATAAAGAATAA 792 0.4482 MLFTSDPVSSTPSSSYNTSSSSSDWEIRLAASCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSDTKDIQKAATEAAEAFRPDKILMTKDVDNAVPVILVPVIATEKLNMFCIEEEDEVMNMNMPELWRNMALMSPTHSFGYHEYEHIDVQDFQDDEDFKKHCTMIWSVTAIGVHSSHFAVISRIMIGTDCELIVDLCFLFGKEKYKE* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2358 263 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Psa1g2358 263 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Psa1g2358 263 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 10 224 - -
Psa1g2358 263 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 224 IPR045277 GO:0003700
Psa1g2358 263 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Psa1g2358 263 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Psa1g2358 263 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Psa1g2358 263 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Psa1g2358 263 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Psa1g2358 263 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2358 Psa-Chr1 188825345 188828489 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2358 20 198 AP2-EREBP Transcription Factor Family AT4G25470 57.065 8.93e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g2358 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2358 - K09286 mtr:MTR_6g465460 325.479