Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2353 ATGGATAGGTTTACTACAAACAACTCTTGTTCTTCCTATGACATGTCATTCCCGAATTCAGAGAGCTCTCAGTGGATATCAATTTCCAATGAGGAGTTTCGCTTAGCTGCGACAACCCCGAAGAAGCGTGCAGGCAGGAAGAAGTTCAAGGAGACTCGCCATCCGATATATAGAGGTGTGAGGAGAAGAAACAATGATAAATGGGTATGTGAAATGAGAGAACCTAACAAGAAAACTAAGATTTGGCTAGGAACTTTTCCAACTGTCGAGATGGCTGCCCGAGCACACGATGTTGCTGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCAACATGGCGGCTCCCTAAACCCGCCACCACTCAGGCAAAAGATATACAAAAGGCAGCTACAGAGGCCGCCGAGGCTTTCAGACCAGAAAAGACTTTAACAACTAACGACATTGACAAGATTTTAACGATTAATGACGTCGACATTGAAACTGGTGTAGCTGCCTCCGCCACAGTGGAACAGATTTTGGATTGCATGGAATTGGAAGAAGAGGGAGTGATGAGCATGCCAGAGATGTGGAGGAATATGGCACTAATGTCTCCAACACATAGTTTTGAATATCAAGATGAGTATCAATATATTGATGTACAAGACTATCAAGATCAAGAGATATCACTATGGACTTTTTAG 693 0.4387 MDRFTTNNSCSSYDMSFPNSESSQWISISNEEFRLAATTPKKRAGRKKFKETRHPIYRGVRRRNNDKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSTWRLPKPATTQAKDIQKAATEAAEAFRPEKTLTTNDIDKILTINDVDIETGVAASATVEQILDCMELEEEGVMSMPEMWRNMALMSPTHSFEYQDEYQYIDVQDYQDQEISLWTF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2353 230 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 229 - -
Psa1g2353 230 CDD AP2 55 115 IPR001471 GO:0003700|GO:0006355
Psa1g2353 230 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Psa1g2353 230 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Psa1g2353 230 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Psa1g2353 230 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Psa1g2353 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 229 IPR045277 GO:0003700
Psa1g2353 230 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Psa1g2353 230 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Psa1g2353 230 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2353 Psa-Chr1 188029326 188030537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2353 8 230 AP2-EREBP Transcription Factor Family AT4G25470 51.556 8.05e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2353 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2353 - K09286 mtr:MTR_6g465460 269.24