Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2351 ATGGTTCCCTATATATACAACACCTTACTCTTCATAATCTTTACACCAACTCTATCTTCAGCCACCAATTTCACTATCAATACCTTTTTATACTCTCTCCAACACACAGTTATGTTTCCAACTAACAACCCTTCCACTTCACAACCCACTTCTTCAAAACCTTCAACTTCCTCCAACACATCATTGCCAAATTTAGATGTCTCTCATGAGATGCCAGTTTTCAACGAGGAAGTTCGACTAGCTGCAAGTACACCGAAGAAGCGGGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTTCAGGGGTGTGAGGAGGAGGAACTTAGATAAGTGGGTGTGTGAAATGAGAGAGCCTAACAAGAAGACTAAAATTTGGTTGGGGACTTTTCCGACAGCCGAGATGGCTGCCCGAGCCCATGATGTTGCGGCATTAGCATTGAGAGGTCGCAACGCCTGTCTCAACTTTGCAGACTCAGCGTGGCGACTTCCTGTTCCTGCCACTACCGCAACAAAAGATATACAAAAGGCGGCTGCACAAGCTGCCGAGGCTTTCAGACCAGACAAGACTTTCAGAGCAGACAAGGCTTTAACGACTAATAATATCGAAACAGCCGAAGCCGCCTCCATCACTACAGAGGAGCAGCTTATGTTTTGTTTGGAAGAGGAACAAGAGGAGGAAGTGTTAAACATTCCAGAGTCCTTGAGAAATATGGCTCTTCTGTCCCCAACACATAGCTTGGGGCATGAGTTTGAGTATCAAGATATGAATACAGACTTTGAAGATGTTGAGGTGTCACTATGGAGTTTTTCTCTTTGA 822 0.455 MVPYIYNTLLFIIFTPTLSSATNFTINTFLYSLQHTVMFPTNNPSTSQPTSSKPSTSSNTSLPNLDVSHEMPVFNEEVRLAASTPKKRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSAWRLPVPATTATKDIQKAAAQAAEAFRPDKTFRADKALTTNNIETAEAASITTEEQLMFCLEEEQEEEVLNIPESLRNMALLSPTHSLGHEFEYQDMNTDFEDVEVSLWSFSL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2351 273 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 38 272 - -
Psa1g2351 273 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Psa1g2351 273 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Psa1g2351 273 SUPERFAMILY DNA-binding domain 101 160 IPR016177 GO:0003677
Psa1g2351 273 MobiDBLite consensus disorder prediction 43 62 - -
Psa1g2351 273 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Psa1g2351 273 CDD AP2 102 160 IPR001471 GO:0003700|GO:0006355
Psa1g2351 273 Pfam AP2 domain 100 150 IPR001471 GO:0003700|GO:0006355
Psa1g2351 273 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Psa1g2351 273 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 38 272 IPR045277 GO:0003700
Psa1g2351 273 Gene3D AP2/ERF domain 101 159 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2351 Psa-Chr1 187573131 187574842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2351 79 271 AP2-EREBP Transcription Factor Family AT5G51990 54.726 2.15e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2351 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2351 - - gmx:547622 256.144