Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2350 ATGTTTCCAACTAACAGCTCTTCCACTTCACAACCCAGTTCCTCAAAACCTTCCACTTCCTCCAACACAACATTGCCAAATTTAGAGGTCTCTCATGACATGTCAGTTTTCAACGAGGAACTGCGGTTAGCTGCTAGTACACCGAAGAAACGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCTGTGTATAGGGGTGTAAGGAGGAGGAACTTAGATAAATGGGTCTGTGAAATGAGGGAGCCAAACAAGAAGACTAAAATTTGGCTAGGAACTTTTCCGACAGCTGAGATGGCAGCCCGAGCTCATGATGTTGCAGCATTGGCATTAAGAGGTCGTTACGCTTGTCTCAACTTTAGAGACTCCGCATGGCGACTCCCTGTTCCAGCCACTACCGAGACAAAAGATATACAAAAGGCAGCTGCACTGGCCGCCGAAGCTTTCAGACCAGCCAACAAGACTTTAGAACCAGATGAGGCTTTTAGACCAGACAAAACTTTAGAATCAGATGATGCTTTCGAACCAGACAAGACTTTAATATCTAATGACATTGACACGGCAGTAGCTGCAACAACAGAAGAGCAATTTATGTTTCGTATGGAAGAGGAAGAAGAAGAGAAAGAGTTGAGCATTCCAGAAATGTTAAAGAATATGGCACTAATGTCCCCAACACATAGCTTGGGACATGAGGATGAACATATTGATGCAGACTTTGAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 756 0.4431 MFPTNSSSTSQPSSSKPSTSSNTTLPNLEVSHDMSVFNEELRLAASTPKKRAGRKKFKETRHPVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRYACLNFRDSAWRLPVPATTETKDIQKAAALAAEAFRPANKTLEPDEAFRPDKTLESDDAFEPDKTLISNDIDTAVAATTEEQFMFRMEEEEEEKELSIPEMLKNMALMSPTHSLGHEDEHIDADFEDVEVSLWSFSI* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2350 251 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Psa1g2350 251 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Psa1g2350 251 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Psa1g2350 251 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 154 IPR045277 GO:0003700
Psa1g2350 251 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 169 251 IPR045277 GO:0003700
Psa1g2350 251 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 169 251 - -
Psa1g2350 251 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 154 - -
Psa1g2350 251 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Psa1g2350 251 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Psa1g2350 251 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Psa1g2350 251 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Psa1g2350 251 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Psa1g2350 251 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2350 Psa-Chr1 186960837 186963002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2350 43 249 AP2-EREBP Transcription Factor Family AT4G25480 54.545 1.80e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2350 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2350 - - mtr:MTR_6g465850 275.789