Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2349 ATGTTTCCATCTAACAACCCTTCCACTTCACAACCCACTTCTTCTAAACCTTCAACTTCTTCCAACACATCATTGCCAAATTTAGAGGTTTCTCATGAGATGGAAGTTTTCAACGAGGAGGTGCGGTTAGCTGCGAGTACACCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCATCCGGTGTTCAGGGGTGTGAGGAGGAGGAACTTGGATAAGTGGGTGTGTGAAATGAGAGAGCCTAACAAGAAGACTAAAATTTGGTTAGGGACTTTTCCGACGGCCGAGATGGCTGCCCGAGCCCATGATGTCGCGGCATTAGCATTGAGAGGTCGTAACGCCTGTCTCAACTTTGCAGACTCGGCATGGCGACTTCCTATTCCTGCCACTACCGCGACAAAAGATATACAAAAGGCAGCTGCACAAGCTGCCGCGGATTTCAGACCAGACAAGATTTTAATGGCTAATTATATCGAAACAGCTGAAGCCGCCTCCGCCACCACAGAGCAGCAGCTTATGTTTCGTTTGGAAGAGGAACAAGAGGAGGAAGTGTTAAACATTCCAGAGTCCTTGAGAAATATGGCTCTTCTGTCCCCTACACATAGCTTGGGGCATGAGTTTGAGTATCAAGATATTAATGAAGACCTTGAAGATGTTGAGATGTCACTATGGAGTTTTTCTCTTTGA 693 0.4704 MFPSNNPSTSQPTSSKPSTSSNTSLPNLEVSHEMEVFNEEVRLAASTPKKRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSAWRLPIPATTATKDIQKAAAQAAADFRPDKILMANYIETAEAASATTEQQLMFRLEEEQEEEVLNIPESLRNMALLSPTHSLGHEFEYQDINEDLEDVEMSLWSFSL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2349 230 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 229 - -
Psa1g2349 230 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Psa1g2349 230 MobiDBLite consensus disorder prediction 1 31 - -
Psa1g2349 230 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Psa1g2349 230 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Psa1g2349 230 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Psa1g2349 230 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Psa1g2349 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Psa1g2349 230 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Psa1g2349 230 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Psa1g2349 230 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Psa1g2349 230 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2349 Psa-Chr1 186943848 186945114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2349 42 228 AP2-EREBP Transcription Factor Family AT4G25470 56.345 2.27e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2349 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2349 - K09286 gmx:547622 255.373