LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g2343	ATGGTCGGTGCTGGATTTGCTTTTGCAGGATTAATGGGTATGGAATCGATGAATGCGCTAGCCAATCCTGTAGAGCTTGTTGATGATGGTATGGATGCAACAATAATCACAGGCAGCTTGAATTTTATCGATGGAACAACCACTTTCAATAGTGCAACTGTTGCTGCTGTTGGAGATGAGTTTATAGCTCAGGACATAGGGTTCCAAAACACGGCAGGCCCAGAAAAGCACCAGGCGGTTGCTCTCCGCGTCCAGAAGAGCAAACTTGTGGCCCGAAAGCCCATGAGCAAACAAAAGACAAGGTCACAGTCCAAGGTCGAGAAGACCCAAACCAGACACTGCAACTTCAATTCGCAATGTAATGTCATACCAAGCTCGGACCTCAAGCCTGTGCAAGGCTCCATCAAAACATACCTAGGCCGTCCATGGAAGAAATACTCCAGGACTGTTGTGTTGCAGTCCGTCGTGGACAGCCATATTGACCCAGCAGGATGGGCTGAATGGGATGCCGCGAGTAAGGATTTTCTGCAAACATTGTATTACGGAGAGTACTTGGACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAACACAGCTCATCCAGGGCAATGTTTGGTTGAAGAAACACAGGGGTAGCCTTCATTGA	705	0.4809	MVGAGFAFAGLMGMESMNALANPVELVDDGMDATIITGSLNFIDGTTTFNSATVAAVGDEFIAQDIGFQNTAGPEKHQAVALRVQKSKLVARKPMSKQKTRSQSKVEKTQTRHCNFNSQCNVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDSHIDPAGWAEWDAASKDFLQTLYYGEYLDSGAGAGTSKRVTWPGYHIIKTAAEASKFTVTQLIQGNVWLKKHRGSLH*	235

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g2343	234	PANTHER	PECTINESTERASE	85	229	-	-
	Psa1g2343	234	PANTHER	PECTINESTERASE	24	84	-	-
	Psa1g2343	234	Pfam	Pectinesterase	85	223	IPR000070	GO:0030599\|GO:0042545
	Psa1g2343	234	PANTHER	PECTINESTERASE	24	84	-	-
	Psa1g2343	234	PANTHER	PECTINESTERASE	85	229	-	-
	Psa1g2343	234	Gene3D	-	90	232	IPR012334	-
	Psa1g2343	234	Gene3D	-	15	89	IPR012334	-
	Psa1g2343	234	SUPERFAMILY	Pectin lyase-like	22	228	IPR011050	-

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g2343	Psa-Chr1	186730764	186732105	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g2343	26	227	Carbohydrate Esterase	AT1G11580	49.603	3.56e-72	228

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g2343	K01051		-	gmx:100815836	294.278

Showing 1 to 1 of 1 entries