Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2343 ATGGTCGGTGCTGGATTTGCTTTTGCAGGATTAATGGGTATGGAATCGATGAATGCGCTAGCCAATCCTGTAGAGCTTGTTGATGATGGTATGGATGCAACAATAATCACAGGCAGCTTGAATTTTATCGATGGAACAACCACTTTCAATAGTGCAACTGTTGCTGCTGTTGGAGATGAGTTTATAGCTCAGGACATAGGGTTCCAAAACACGGCAGGCCCAGAAAAGCACCAGGCGGTTGCTCTCCGCGTCCAGAAGAGCAAACTTGTGGCCCGAAAGCCCATGAGCAAACAAAAGACAAGGTCACAGTCCAAGGTCGAGAAGACCCAAACCAGACACTGCAACTTCAATTCGCAATGTAATGTCATACCAAGCTCGGACCTCAAGCCTGTGCAAGGCTCCATCAAAACATACCTAGGCCGTCCATGGAAGAAATACTCCAGGACTGTTGTGTTGCAGTCCGTCGTGGACAGCCATATTGACCCAGCAGGATGGGCTGAATGGGATGCCGCGAGTAAGGATTTTCTGCAAACATTGTATTACGGAGAGTACTTGGACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAACACAGCTCATCCAGGGCAATGTTTGGTTGAAGAAACACAGGGGTAGCCTTCATTGA 705 0.4809 MVGAGFAFAGLMGMESMNALANPVELVDDGMDATIITGSLNFIDGTTTFNSATVAAVGDEFIAQDIGFQNTAGPEKHQAVALRVQKSKLVARKPMSKQKTRSQSKVEKTQTRHCNFNSQCNVIPSSDLKPVQGSIKTYLGRPWKKYSRTVVLQSVVDSHIDPAGWAEWDAASKDFLQTLYYGEYLDSGAGAGTSKRVTWPGYHIIKTAAEASKFTVTQLIQGNVWLKKHRGSLH* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2343 234 PANTHER PECTINESTERASE 85 229 - -
Psa1g2343 234 PANTHER PECTINESTERASE 24 84 - -
Psa1g2343 234 Pfam Pectinesterase 85 223 IPR000070 GO:0030599|GO:0042545
Psa1g2343 234 PANTHER PECTINESTERASE 24 84 - -
Psa1g2343 234 PANTHER PECTINESTERASE 85 229 - -
Psa1g2343 234 Gene3D - 90 232 IPR012334 -
Psa1g2343 234 Gene3D - 15 89 IPR012334 -
Psa1g2343 234 SUPERFAMILY Pectin lyase-like 22 228 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2343 Psa-Chr1 186730764 186732105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2343 26 227 Carbohydrate Esterase AT1G11580 49.603 3.56e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2343 K01051 - gmx:100815836 294.278