Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2335 ATGTGCCACAGAAGAGAGATTTTGATAACAGGACTCTTTGCTTTGCTCAAGGTACTCACTCTATCTTCCAGTCCTCTACTTCTGAATGAATTTATATTGGTTGTCGAAGGTAATAAAAGTTTCAAATATGAAGGTTATGTATTGGCAATATCACTCTTTTTTATAAAGATCATAGAATCCCTATCACAAAGACAATGGTATTTTCGTACTAGACTTATTGGGATGAAAATTAGATCAGTGCTTACTGCAGCCATTAATAAAAAAATATTACGGCTATCCAGTTCTGCTAGACAGATTCACTCAAGTGGTGAGATAATGAATTATATGAACGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACAAGACTTGGACAACAGTCCTCCAACTATCTATTGCATTAGTAATTCTTTTCCGAGCAATTGGACTAGCAACAATAGCCTCATTGGCGGTGATAGTTCTCACTGTTCTTTGCAACACTCCACTAGCAAAGTTACAACACAAGTTTCAAAGCAAACTAATGGTGGCACAAGATGAGAGACTAAAAGCTAGTTACGAGGCTTTAATGAATATGAAAGTGCTGAAACTATATGCATGGGAAACCCATTTTAGAAATGCCATAGATTACTTAAGAAATATGGAACTCAAATTGTTATCTGCAGTGCAATTAAGAAGAACGCACCTTGTTTTTCTTTTTTGGACCTCGCCGATTTTGGTATCTTCTGCTTCTTTTCTGGCATGTTACTTCTTGAAAGTTCCTTTGCATGCAAGTAACGTTTTCACTTTCGTGGCAACTTTGCGCCTTGTTCAAGATCCAATTACAAGTATTCCAGATGTTATTGCAGTAACCATTCAGGCAAAAGTCGCATTCGCTAGGATTGTTAATTTCCTCGAGGCACCAGAACTGCAGAGTGAAAATATCAAGGACACATGCTTTAGTGATAACCTCAAAGGCTCAGTTTTAATCAAATCTGCCGAATTTTCATGGGAATGTGATGTATCAAAGCCAACACTAAGAAACATAAATTTGGACGTTAAACACGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGCAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTCCTAATACAAAGGGAACTATTGATGTTCAAGGGAAGATTGCATATGTTTCCCAAACATCATGGATACAAACAGGGACAATACGTGAAAATATTTTGTTTGGATCTGAGTTGGATGATCAAAGGTATCAAGAAACTCTTCAAAGATCTTCACTGGTAAAGGACCTTGAGTTGTTTCCCTGTGGTGACCTCATTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAACGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATTTATATCTCTTGGATGATCCATTTAGCGCTGTTGATGCTCATACTGCAAAAAAATTGTTTAACGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTGACTCATCAAGTCGACTTCCTCCCAGCGTTTGATTCTATTTTGTTGATGTCAGATGGAGCAATCCTACAAGCTGGTCCATATCACCAACTACTGACCTCAAGTCAAGAATTCCATGACCTTGTCAATGCTCACAAAGACACTGCTGGTTCTAACCAGCTTCTGAATGCTACTTTTCCACAGAGACATTCAACTTCTACAGAGATTACGCAAACTTCCATGCAGAAGCAATTCAAAGCACCAAATGAAAATCAATTCATTAAACAAGAAGAGAGAGAGAGAGGAGACACGGGATTGAAACCTTACTTACAATATCTGGATCAGATGAAAGGCTATATATTCTTCTTTGTGGCTTCACTTTGTCACCTTATTTTTGTTGTTTTCCAAATATTGCAAAACACGTGGATGGCTGCTAATGTGGACAATCCGCATGTCAGCACGTTGCAATTGATTTTAGTTTATTTCCTAATTGGTGTTTCTTCAACATTTTTCTTGTTGATTAGAAGTCTACTTTTGGTTGCTTTGGGTCTTCAATCATCAAAATATTTATTTTTGCGACTGATGAACTCCCTCTTTCGCGCGCCCATGTCCTTTTATGACTCTACACCATCAGGAAGGATACTCTGCAGGGTCTCATCTGATCTGAGCATTATGGATATTGACATCCCATTCAGCCTCACTTTTGCGGTGGCAGGAACTCTATTTTTTTATTCTAGTCTTACAGTTTTGGCAGTTGTCACTTGGCAAGTCTTGGTTGTGGCTATTCCAATGGTTTCTGTTGCAATTTACTTGCAGAGATACTACTTTGCCTCAGCAAAAGAGGTAATGAGAATGAATGGCACAACAAAATCCTTTTTAGCTAATCATGTAGCTGAAACTATTGCTGGAGCTGTGACAATAAGGGCTTTTAAGGAGGAGGGTCGTTCTTTTAAGAAGAACCTCGATTTAATTGATATTAACGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTGATTCAACGGTTAGAAACAATCAGTGCAGTTGTTCTCACTGCTGCAGCACTTTGCATGGTTATGCTCCCACCTGGAACATTCACCCCAGGAATTATTGGCATGGCTCTATCTTATGGTCTTTCACTAAGTGCTTCATTAGTATTTTCAATTCAAAATCAATGCACTCTTGCAAATCACATAATATCAGTAGAGAGACTAAATCAGTATATGCATATACAAAGTGAGGCGGAAGAAATAATAGAAGGAAACCGTCCTCCTTTGAGCTGGCCAGTTGCAGGCAAAGTAGAAATAAATAACTTAAAGGTACGATACAGGTCCGATGGACCACTTGTACTTCATGGGATCACATGCACATTTAAAGCAGGGCACAAGGTTGGTATTGTTGGAAGAACGGGAAGTGGGAAATCGACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCCGCAGGAGGAAAAATAATAGTTGATGGAATAGACATATCATCTATTGGCCTTCATGATTTAAGGTCACGCTTTGGGGTTATACCTCAGGATCCTACTCTTTTTAACGGGACAGTAAGATATAACTTGGACCCTTTATCTCAACACACTGATGAAGAGATATGGGAGGTTCTTGGAAAGTGTCAACTAAAAGAAGTTGTCCAACGAAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAGAATGGATCAAACTGGAGCATGGGACAAAGACAACTATTCTGTATGGGACGTGCGCTTTTAAGGAAAAGTAGGATATTGATACTCGATGAAGCAACTGCATCAATTGATAATTCAACCGATACGATTCTACAGAAAACCATTAGAACGGAATTTTCAGATTGTACAGTGATCACAGTAGCACACAGAATACCGACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGACGGAAAATTGGTGGAGTATAATGAACCATCGAGCTTAATGAAGAGTGAAGACTCGCTGTTCCGGAAGCTTGTCGAGGAATACTGGTCTCATATTCAATCTGCAGAATTGCATTGA 3534 0.3896 MCHRREILITGLFALLKVLTLSSSPLLLNEFILVVEGNKSFKYEGYVLAISLFFIKIIESLSQRQWYFRTRLIGMKIRSVLTAAINKKILRLSSSARQIHSSGEIMNYMNVDAYRIGEFPFWFHKTWTTVLQLSIALVILFRAIGLATIASLAVIVLTVLCNTPLAKLQHKFQSKLMVAQDERLKASYEALMNMKVLKLYAWETHFRNAIDYLRNMELKLLSAVQLRRTHLVFLFWTSPILVSSASFLACYFLKVPLHASNVFTFVATLRLVQDPITSIPDVIAVTIQAKVAFARIVNFLEAPELQSENIKDTCFSDNLKGSVLIKSAEFSWECDVSKPTLRNINLDVKHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVQGKIAYVSQTSWIQTGTIRENILFGSELDDQRYQETLQRSSLVKDLELFPCGDLIEIGERGVNLSGGQKQRIQLARALYQNADLYLLDDPFSAVDAHTAKKLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSILLMSDGAILQAGPYHQLLTSSQEFHDLVNAHKDTAGSNQLLNATFPQRHSTSTEITQTSMQKQFKAPNENQFIKQEERERGDTGLKPYLQYLDQMKGYIFFFVASLCHLIFVVFQILQNTWMAANVDNPHVSTLQLILVYFLIGVSSTFFLLIRSLLLVALGLQSSKYLFLRLMNSLFRAPMSFYDSTPSGRILCRVSSDLSIMDIDIPFSLTFAVAGTLFFYSSLTVLAVVTWQVLVVAIPMVSVAIYLQRYYFASAKEVMRMNGTTKSFLANHVAETIAGAVTIRAFKEEGRSFKKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCMVMLPPGTFTPGIIGMALSYGLSLSASLVFSIQNQCTLANHIISVERLNQYMHIQSEAEEIIEGNRPPLSWPVAGKVEINNLKVRYRSDGPLVLHGITCTFKAGHKVGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHTDEEIWEVLGKCQLKEVVQRKEEGLNSSVVENGSNWSMGQRQLFCMGRALLRKSRILILDEATASIDNSTDTILQKTIRTEFSDCTVITVAHRIPTVMDCTMVLSISDGKLVEYNEPSSLMKSEDSLFRKLVEEYWSHIQSAELH* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2335 1177 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 1177 - -
Psa1g2335 1177 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1177 - -
Psa1g2335 1177 SUPERFAMILY ABC transporter transmembrane region 605 913 IPR036640 GO:0005524|GO:0016021
Psa1g2335 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 546 IPR027417 -
Psa1g2335 1177 SUPERFAMILY ABC transporter transmembrane region 3 304 IPR036640 GO:0005524|GO:0016021
Psa1g2335 1177 ProSitePatterns ABC transporters family signature. 448 462 IPR017871 GO:0005524
Psa1g2335 1177 CDD ABCC_MRP_domain1 323 522 - -
Psa1g2335 1177 SMART AAA_5 350 523 IPR003593 -
Psa1g2335 1177 SMART AAA_5 957 1149 IPR003593 -
Psa1g2335 1177 Gene3D ABC transporter type 1, transmembrane domain 578 913 IPR036640 GO:0005524|GO:0016021
Psa1g2335 1177 CDD ABC_6TM_ABCC_D1 29 296 IPR044746 GO:0140359
Psa1g2335 1177 Pfam ABC transporter transmembrane region 8 272 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2335 1177 Pfam ABC transporter transmembrane region 615 875 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2335 1177 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 618 894 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2335 1177 CDD ABCC_MRP_domain2 929 1149 - -
Psa1g2335 1177 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 931 1165 IPR003439 GO:0005524
Psa1g2335 1177 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 8 288 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2335 1177 Gene3D - 915 1166 IPR027417 -
Psa1g2335 1177 Gene3D ABC transporter type 1, transmembrane domain 2 298 IPR036640 GO:0005524|GO:0016021
Psa1g2335 1177 Pfam ABC transporter 948 1096 IPR003439 GO:0005524
Psa1g2335 1177 Pfam ABC transporter 341 475 IPR003439 GO:0005524
Psa1g2335 1177 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 325 546 IPR003439 GO:0005524
Psa1g2335 1177 Gene3D - 299 566 IPR027417 -
Psa1g2335 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1164 IPR027417 -
Psa1g2335 1177 CDD ABC_6TM_ABCC_D2 617 906 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2335 Psa-Chr1 184639389 184646044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2335 304 534 Calmodulin-binding Proteins AT2G36910 30.769 3.57e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2335 K05666 - gmx:100787314 1854.34