Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g2335 | ATGTGCCACAGAAGAGAGATTTTGATAACAGGACTCTTTGCTTTGCTCAAGGTACTCACTCTATCTTCCAGTCCTCTACTTCTGAATGAATTTATATTGGTTGTCGAAGGTAATAAAAGTTTCAAATATGAAGGTTATGTATTGGCAATATCACTCTTTTTTATAAAGATCATAGAATCCCTATCACAAAGACAATGGTATTTTCGTACTAGACTTATTGGGATGAAAATTAGATCAGTGCTTACTGCAGCCATTAATAAAAAAATATTACGGCTATCCAGTTCTGCTAGACAGATTCACTCAAGTGGTGAGATAATGAATTATATGAACGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACAAGACTTGGACAACAGTCCTCCAACTATCTATTGCATTAGTAATTCTTTTCCGAGCAATTGGACTAGCAACAATAGCCTCATTGGCGGTGATAGTTCTCACTGTTCTTTGCAACACTCCACTAGCAAAGTTACAACACAAGTTTCAAAGCAAACTAATGGTGGCACAAGATGAGAGACTAAAAGCTAGTTACGAGGCTTTAATGAATATGAAAGTGCTGAAACTATATGCATGGGAAACCCATTTTAGAAATGCCATAGATTACTTAAGAAATATGGAACTCAAATTGTTATCTGCAGTGCAATTAAGAAGAACGCACCTTGTTTTTCTTTTTTGGACCTCGCCGATTTTGGTATCTTCTGCTTCTTTTCTGGCATGTTACTTCTTGAAAGTTCCTTTGCATGCAAGTAACGTTTTCACTTTCGTGGCAACTTTGCGCCTTGTTCAAGATCCAATTACAAGTATTCCAGATGTTATTGCAGTAACCATTCAGGCAAAAGTCGCATTCGCTAGGATTGTTAATTTCCTCGAGGCACCAGAACTGCAGAGTGAAAATATCAAGGACACATGCTTTAGTGATAACCTCAAAGGCTCAGTTTTAATCAAATCTGCCGAATTTTCATGGGAATGTGATGTATCAAAGCCAACACTAAGAAACATAAATTTGGACGTTAAACACGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGCAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTCCTAATACAAAGGGAACTATTGATGTTCAAGGGAAGATTGCATATGTTTCCCAAACATCATGGATACAAACAGGGACAATACGTGAAAATATTTTGTTTGGATCTGAGTTGGATGATCAAAGGTATCAAGAAACTCTTCAAAGATCTTCACTGGTAAAGGACCTTGAGTTGTTTCCCTGTGGTGACCTCATTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAACGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATTTATATCTCTTGGATGATCCATTTAGCGCTGTTGATGCTCATACTGCAAAAAAATTGTTTAACGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTGACTCATCAAGTCGACTTCCTCCCAGCGTTTGATTCTATTTTGTTGATGTCAGATGGAGCAATCCTACAAGCTGGTCCATATCACCAACTACTGACCTCAAGTCAAGAATTCCATGACCTTGTCAATGCTCACAAAGACACTGCTGGTTCTAACCAGCTTCTGAATGCTACTTTTCCACAGAGACATTCAACTTCTACAGAGATTACGCAAACTTCCATGCAGAAGCAATTCAAAGCACCAAATGAAAATCAATTCATTAAACAAGAAGAGAGAGAGAGAGGAGACACGGGATTGAAACCTTACTTACAATATCTGGATCAGATGAAAGGCTATATATTCTTCTTTGTGGCTTCACTTTGTCACCTTATTTTTGTTGTTTTCCAAATATTGCAAAACACGTGGATGGCTGCTAATGTGGACAATCCGCATGTCAGCACGTTGCAATTGATTTTAGTTTATTTCCTAATTGGTGTTTCTTCAACATTTTTCTTGTTGATTAGAAGTCTACTTTTGGTTGCTTTGGGTCTTCAATCATCAAAATATTTATTTTTGCGACTGATGAACTCCCTCTTTCGCGCGCCCATGTCCTTTTATGACTCTACACCATCAGGAAGGATACTCTGCAGGGTCTCATCTGATCTGAGCATTATGGATATTGACATCCCATTCAGCCTCACTTTTGCGGTGGCAGGAACTCTATTTTTTTATTCTAGTCTTACAGTTTTGGCAGTTGTCACTTGGCAAGTCTTGGTTGTGGCTATTCCAATGGTTTCTGTTGCAATTTACTTGCAGAGATACTACTTTGCCTCAGCAAAAGAGGTAATGAGAATGAATGGCACAACAAAATCCTTTTTAGCTAATCATGTAGCTGAAACTATTGCTGGAGCTGTGACAATAAGGGCTTTTAAGGAGGAGGGTCGTTCTTTTAAGAAGAACCTCGATTTAATTGATATTAACGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAATGAGTGGTTGATTCAACGGTTAGAAACAATCAGTGCAGTTGTTCTCACTGCTGCAGCACTTTGCATGGTTATGCTCCCACCTGGAACATTCACCCCAGGAATTATTGGCATGGCTCTATCTTATGGTCTTTCACTAAGTGCTTCATTAGTATTTTCAATTCAAAATCAATGCACTCTTGCAAATCACATAATATCAGTAGAGAGACTAAATCAGTATATGCATATACAAAGTGAGGCGGAAGAAATAATAGAAGGAAACCGTCCTCCTTTGAGCTGGCCAGTTGCAGGCAAAGTAGAAATAAATAACTTAAAGGTACGATACAGGTCCGATGGACCACTTGTACTTCATGGGATCACATGCACATTTAAAGCAGGGCACAAGGTTGGTATTGTTGGAAGAACGGGAAGTGGGAAATCGACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCCGCAGGAGGAAAAATAATAGTTGATGGAATAGACATATCATCTATTGGCCTTCATGATTTAAGGTCACGCTTTGGGGTTATACCTCAGGATCCTACTCTTTTTAACGGGACAGTAAGATATAACTTGGACCCTTTATCTCAACACACTGATGAAGAGATATGGGAGGTTCTTGGAAAGTGTCAACTAAAAGAAGTTGTCCAACGAAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAGAATGGATCAAACTGGAGCATGGGACAAAGACAACTATTCTGTATGGGACGTGCGCTTTTAAGGAAAAGTAGGATATTGATACTCGATGAAGCAACTGCATCAATTGATAATTCAACCGATACGATTCTACAGAAAACCATTAGAACGGAATTTTCAGATTGTACAGTGATCACAGTAGCACACAGAATACCGACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGACGGAAAATTGGTGGAGTATAATGAACCATCGAGCTTAATGAAGAGTGAAGACTCGCTGTTCCGGAAGCTTGTCGAGGAATACTGGTCTCATATTCAATCTGCAGAATTGCATTGA | 3534 | 0.3896 | MCHRREILITGLFALLKVLTLSSSPLLLNEFILVVEGNKSFKYEGYVLAISLFFIKIIESLSQRQWYFRTRLIGMKIRSVLTAAINKKILRLSSSARQIHSSGEIMNYMNVDAYRIGEFPFWFHKTWTTVLQLSIALVILFRAIGLATIASLAVIVLTVLCNTPLAKLQHKFQSKLMVAQDERLKASYEALMNMKVLKLYAWETHFRNAIDYLRNMELKLLSAVQLRRTHLVFLFWTSPILVSSASFLACYFLKVPLHASNVFTFVATLRLVQDPITSIPDVIAVTIQAKVAFARIVNFLEAPELQSENIKDTCFSDNLKGSVLIKSAEFSWECDVSKPTLRNINLDVKHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIDVQGKIAYVSQTSWIQTGTIRENILFGSELDDQRYQETLQRSSLVKDLELFPCGDLIEIGERGVNLSGGQKQRIQLARALYQNADLYLLDDPFSAVDAHTAKKLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSILLMSDGAILQAGPYHQLLTSSQEFHDLVNAHKDTAGSNQLLNATFPQRHSTSTEITQTSMQKQFKAPNENQFIKQEERERGDTGLKPYLQYLDQMKGYIFFFVASLCHLIFVVFQILQNTWMAANVDNPHVSTLQLILVYFLIGVSSTFFLLIRSLLLVALGLQSSKYLFLRLMNSLFRAPMSFYDSTPSGRILCRVSSDLSIMDIDIPFSLTFAVAGTLFFYSSLTVLAVVTWQVLVVAIPMVSVAIYLQRYYFASAKEVMRMNGTTKSFLANHVAETIAGAVTIRAFKEEGRSFKKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCMVMLPPGTFTPGIIGMALSYGLSLSASLVFSIQNQCTLANHIISVERLNQYMHIQSEAEEIIEGNRPPLSWPVAGKVEINNLKVRYRSDGPLVLHGITCTFKAGHKVGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHTDEEIWEVLGKCQLKEVVQRKEEGLNSSVVENGSNWSMGQRQLFCMGRALLRKSRILILDEATASIDNSTDTILQKTIRTEFSDCTVITVAHRIPTVMDCTMVLSISDGKLVEYNEPSSLMKSEDSLFRKLVEEYWSHIQSAELH* | 1178 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g2335 | 1177 | PANTHER | ABC TRANSPORTER C FAMILY PROTEIN | 1 | 1177 | - | - | |
Psa1g2335 | 1177 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 1 | 1177 | - | - | |
Psa1g2335 | 1177 | SUPERFAMILY | ABC transporter transmembrane region | 605 | 913 | IPR036640 | GO:0005524|GO:0016021 | |
Psa1g2335 | 1177 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 316 | 546 | IPR027417 | - | |
Psa1g2335 | 1177 | SUPERFAMILY | ABC transporter transmembrane region | 3 | 304 | IPR036640 | GO:0005524|GO:0016021 | |
Psa1g2335 | 1177 | ProSitePatterns | ABC transporters family signature. | 448 | 462 | IPR017871 | GO:0005524 | |
Psa1g2335 | 1177 | CDD | ABCC_MRP_domain1 | 323 | 522 | - | - | |
Psa1g2335 | 1177 | SMART | AAA_5 | 350 | 523 | IPR003593 | - | |
Psa1g2335 | 1177 | SMART | AAA_5 | 957 | 1149 | IPR003593 | - | |
Psa1g2335 | 1177 | Gene3D | ABC transporter type 1, transmembrane domain | 578 | 913 | IPR036640 | GO:0005524|GO:0016021 | |
Psa1g2335 | 1177 | CDD | ABC_6TM_ABCC_D1 | 29 | 296 | IPR044746 | GO:0140359 | |
Psa1g2335 | 1177 | Pfam | ABC transporter transmembrane region | 8 | 272 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa1g2335 | 1177 | Pfam | ABC transporter transmembrane region | 615 | 875 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa1g2335 | 1177 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 618 | 894 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa1g2335 | 1177 | CDD | ABCC_MRP_domain2 | 929 | 1149 | - | - | |
Psa1g2335 | 1177 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 931 | 1165 | IPR003439 | GO:0005524 | |
Psa1g2335 | 1177 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 8 | 288 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Psa1g2335 | 1177 | Gene3D | - | 915 | 1166 | IPR027417 | - | |
Psa1g2335 | 1177 | Gene3D | ABC transporter type 1, transmembrane domain | 2 | 298 | IPR036640 | GO:0005524|GO:0016021 | |
Psa1g2335 | 1177 | Pfam | ABC transporter | 948 | 1096 | IPR003439 | GO:0005524 | |
Psa1g2335 | 1177 | Pfam | ABC transporter | 341 | 475 | IPR003439 | GO:0005524 | |
Psa1g2335 | 1177 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 325 | 546 | IPR003439 | GO:0005524 | |
Psa1g2335 | 1177 | Gene3D | - | 299 | 566 | IPR027417 | - | |
Psa1g2335 | 1177 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 921 | 1164 | IPR027417 | - | |
Psa1g2335 | 1177 | CDD | ABC_6TM_ABCC_D2 | 617 | 906 | IPR044726 | GO:0140359 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g2335 | Psa-Chr1 | 184639389 | 184646044 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g2335 | 304 | 534 | Calmodulin-binding Proteins | AT2G36910 | 30.769 | 3.57e-26 | 115 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g2335 | K05666 | - | gmx:100787314 | 1854.34 |