Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2331 ATGGTACCGCCTCTGCCACCGGTGGAAAACGGAGAATCCACCACGACAGTTTCAATTACAACCCCCGCTATAGAGTCTCAGAGATCTATTCCAACGCCGTTTCTCACCAAAACCTATAACCTAGTTGAGGATAAATCCATCGACGACGTTATTTCATGGAACGAAGATGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGTAATTTGCTTCCAAAATATTTCAAACACAATAATTTCTCAAGCTTCGTTCGTCAACTCAATACTTACGGATTTAGAAAAGTAGTACCTGATCGGTGGGAATTCTCGAACGATTGTTTCCGAAGAGGTGAGAAACGGCTTCTATGCGAGATTCAACGCAGGAAAATCTGTTCTGCCATACCGACGTCAGCGTCTATTGCTACAGTTGCGGCGGTGGAAACCGCGACGGTTGCGGTTCCTTCACCTATGCCGCTGACTGTAGTACCTATGGCGACGCCGATGGTTTCACCGTCGAACTCCGATGAAGAACAAGTGATATCATTGAGTTCGTCTCCGTCGCGAGCGCCATCGGAGCTTCTCGACGAGAACGAGAGATTGAAGAAAGAGAATGTTCTGTTGAACAAGGAGCTTGCTGAGATGAGATTGCTCTGCAACAATATATACACTCTCATGTCAAGTTATGCAAACAACAACAACAATAGCAATAGTGGTAACAATAATATTCAAACGGACGGTGGCGCGCTAGGAAGCAGAGAGTCCGGAATGACGGCGGCGAAGCCGTTGGATTTGATGCCGGCGGTGAAACGAAGCTCCGGCATGGAAGAGATGAATCCGAAGCTGTTTGGTGTTGCTATTGGAACGAAACGAGCTAGAGAAAACGGTTGTGAAAGTGGAGAAAGTGGAAGAGATGGTACACTGTTGGGACTACATCTATCTGGTTCTATGGACGTAAAATCAGAGCCGTTGGATTGTCAGGATAGTCACCATAATGATCAAACGCCGTGGTTTAACCGGTGTAATAGAGTGAATGAGAGTTTGTGTAAATGA 1035 0.4628 MVPPLPPVENGESTTTVSITTPAIESQRSIPTPFLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKICSAIPTSASIATVAAVETATVAVPSPMPLTVVPMATPMVSPSNSDEEQVISLSSSPSRAPSELLDENERLKKENVLLNKELAEMRLLCNNIYTLMSSYANNNNNSNSGNNNIQTDGGALGSRESGMTAAKPLDLMPAVKRSSGMEEMNPKLFGVAIGTKRARENGCESGESGRDGTLLGLHLSGSMDVKSEPLDCQDSHHNDQTPWFNRCNRVNESLCK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2331 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 328 IPR027725 -
Psa1g2331 344 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g2331 344 Coils Coil 192 212 - -
Psa1g2331 344 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 13 328 - -
Psa1g2331 344 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g2331 344 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Psa1g2331 344 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g2331 344 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g2331 344 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g2331 344 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g2331 344 Gene3D - 26 124 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2331 Psa-Chr1 184501942 184503794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2331 3 343 HSF AT5G62020 45.304 3.78e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa1g2331 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2331 K09419 - gmx:100812267 418.313