Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2300 ATGTCCTTGTTAACGGTGGCGCATCAAAGAGGCTCAGGTGAGTTCACCGGATTCACGGTGAAGCACGACGGTGGCGATCACGACGAAGGTGGTAATGATGGTGGAAATTTCAACCAAATGCAGGGTGGTAGTTCAATGGTTTCAGGGTATAATGGTGATAGAGAAAGAAATGAAATGGTTTCAGCTCTTACACATGCTGCATCGTCAGGGTCTTATCAAATGGGTAATAATAATGAATGGATTCAAAGAAGTGGTTTTCCTTTGATATCAAGTTTTGGAAATGCATCATCTTCTTCATCTTCATTTTATTCTTCGGGTTCGGGTTCGAGTTCGGGGTTATTCTTACCTTCTGGATCATGGATTGGTCACAAAAGAGAACGTGAGGAAGAAAGTAGTGATTCTAATCAGTTTATAACACAAACTGTTCCTAAACTCTTTAGAACTGTCATGGTACCTTCTCAAGGACAAAGAGAATCATCTTCATCATCAGTAACCGAAGAAGCTCCGGTCACAACGGCCATAGCCACCGCGACATCAACACCGGCAGTCGAAGAAAGCGGCGAGAGACGAAGAAGATACAGAGGTGTTCGACAGAGACCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCACACAAAGCAGCAAGAGTCTGGCTAGGAACATTTGACACAGCAGAAGCAGCAGCAAGAGCTTACGACGAAGCCGCATTGAGATTTCGAGGAAGTAGAGCGAAACTCAACTTCCCCGAAAATGTCAGATCAATTATTCCGCCGCAGCCACGGCCACAACCACAGTCACTGTCGCAACTTCAATCTTTTCCGGCCGCCGTAGTTCCCTCTGGATCACCACAGCCGGCATTTCAAAGTTCATCTGACTTGATCAGAGACTATTTGGAATATTCTCAGATTCTTCAAAGTTCAGGCGATTTTCAGCTACAACAAATGCAGCAACAACAACAACAATTGCAAGCTTCGAATTTGGTTCAACAATGGTATTATAATTCACAATTCTCAGCACTTCAATCTTCATCAGCTTCATTTTCACCATCTACTCAACTTTCTGATTCCTCTGCTTCATTTCCTCTGTTTTCTAGTCAACAAATGGGATTTTTCCGCCCGCCCGAAAATCGTCCGCCTGAGGGCGGACACGGCAGAGGATCGGTGTTTCCGCCGACAACTTGGTCAGATACTAGTGCTCATCCACCACCACCTTATGGTTGA 1221 0.4496 MSLLTVAHQRGSGEFTGFTVKHDGGDHDEGGNDGGNFNQMQGGSSMVSGYNGDRERNEMVSALTHAASSGSYQMGNNNEWIQRSGFPLISSFGNASSSSSSFYSSGSGSSSGLFLPSGSWIGHKREREEESSDSNQFITQTVPKLFRTVMVPSQGQRESSSSSVTEEAPVTTAIATATSTPAVEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRSIIPPQPRPQPQSLSQLQSFPAAVVPSGSPQPAFQSSSDLIRDYLEYSQILQSSGDFQLQQMQQQQQQLQASNLVQQWYYNSQFSALQSSSASFSPSTQLSDSSASFPLFSSQQMGFFRPPENRPPEGGHGRGSVFPPTTWSDTSAHPPPPYG* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2300 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 51 371 - -
Psa1g2300 406 SMART rav1_2 192 255 IPR001471 GO:0003700|GO:0006355
Psa1g2300 406 SUPERFAMILY DNA-binding domain 192 250 IPR016177 GO:0003677
Psa1g2300 406 PANTHER DNA-BINDING DOMAIN 51 371 IPR044808 GO:0003700|GO:0009873
Psa1g2300 406 MobiDBLite consensus disorder prediction 365 406 - -
Psa1g2300 406 Pfam AP2 domain 192 241 IPR001471 GO:0003700|GO:0006355
Psa1g2300 406 CDD AP2 200 251 IPR001471 GO:0003700|GO:0006355
Psa1g2300 406 Gene3D AP2/ERF domain 191 251 IPR036955 GO:0003700|GO:0006355
Psa1g2300 406 ProSiteProfiles AP2/ERF domain profile. 192 249 IPR001471 GO:0003700|GO:0006355
Psa1g2300 406 PRINTS Ethylene responsive element binding protein signature 193 204 IPR001471 GO:0003700|GO:0006355
Psa1g2300 406 PRINTS Ethylene responsive element binding protein signature 215 231 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2300 Psa-Chr1 179602535 179604858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2300 169 264 AP2-EREBP Transcription Factor Family AT2G33710 63.918 3.74e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2300 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2300 - - mtr:MTR_6g037610 442.965