Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2292 ATGACTACCGTGTGCAGGTGGGCAGCATTTGTGGATGGGTCGGATGTAGCGGAAGCCGGTTCTCATGCATCAGGATCAACTAGTCCTCGTGTTCGCCATTCTCTATCACAGATGCATCAAGAAGAAGTCAGCGAACCTGACATTGGTGAGTGGGAAAATGCCGAGAATCCTCATACCATGCTTTACCAAAAATATGCACCCAAAGGTCTGAAAACACTTTTGAATTTTGCTCGGAAGAGCAAAGCTGAAGTAGGTACTGCAAGGCTGTTCCGGATGACCAACTCAGTAGGAGATGGCAATAAACTTCACTTCACACCTGACGATGTTAGTGACACACTGCCTGTACCGGCTGATAGCAACATGCATAATTCTTCTCCCTCGATTCATGTCTTGGAGTCCAAAGATTCTGGAAAGTTTGTTGTTGCATTGACTGATCCAGTCTCAATCTTTGCTTCAAAACGGGCAGTTAATTCCTTATTACTTTCTGAGCTTCTTGAGAAATTGAAAGGATGGATGGATTCAACCTCTAGAGCCAGATCAATTCCTGTTATACAGCTTTTCTACAGGTTGTCATCTGTCGTGGGTGGACCTTTCATAGACAGCTCAAAGCCCGACAGTTTAGATTTAGAGAAACTAATCAAATGGTCTTTGGATGAGATTAATATCAACAGACCATTTGTAGCCAGAACCCGGTCTTCAATTAGGGAAGTTGCGATCCTAGCCTTCATGTTTTTCACATTGATGCTTAGAAATTGGCATCAGCCCGGCAGTGACGTTTCCATCCCAATACACAATGGAACTACTGATGTTCATCATAAAAATGTAATCCAACTTTCTTCATCCATTTCCAAGACTTTAATTGATGATCAAGAGAAGAACGACTTCGCATCACAACTGCTCCAAGCTTGTGATTCTCTTAGGCAGCAATCTTTCAACCACGTCAATGGCACTGACTTGGGAGGGGATAACTACGAGGTGCAAATTCTTTTGCTTCGAAGATCACAATCACATAGAGCAATACTTTCTAGTCTCTCATCAATATTGACTTCTGCTGCAAGGAGGAGAGTTGATGCTTCAAGAGTGTCTAATATGGACAGTGGAGATTCTCGTGATCCAAGGTGCAGACTGCTGGAAAAGGAAGAGCATAAGCCATTCCTTATCTGTGCATTAACCCCACTTCACAAGCCAACGTGTGTCTCTATGTATCACCAACAGTTTTCTTATTGTGTTACACAATTTGTTGAGAAAGATGTCAAGTTAGCTGATATTGTGATCAGAGGTCTTTTGAAATATTGGCCTGTAACTATTAGTGCAAAAGAGAGACGAGCTTATCGTGATGCGACAAAAATTGTTGGGTTAAAGCCTTTGAGATTGATCCATGATTGTACTGCAACTGCCCTTAGTTATGGAATTTACAAAACGAATTTTCAAAGCGAGGGTTCAACATATGTTGCATTTATCGACATTGGTCAATGCGATACTCAGGTCTGCATTGCAGCGTTTCAGTTCATGCAAATGAAGATACTTTCCCATACTTTTGACAGGAGTTTAGGTGGGAGGGACTTTGACGAGGCATGCATTAGGCTGCGTGCAGCATGTGAGAAATTGAAGAAAGTTTTGAGTGCAAATCCAGAGGCACCGCTAAATATTGAGTGTTTGATGGATGAGAAAGATTTTAAGGGCTTTATCACACGGGAAGAATTTGAGAGTCTCGCATCGGGATTATTGGAGAGAATTTCTAAACCTTGCAGCCAAGCATTACTTGAATCAGGCTTGAATGCAGAGAAGATTGTTTCTGTAGAACTAGTTGGTTCAGGTTCTAGGATTCCAGTTGTTACTCTCGTTGTATTTCCTATGATAGCCGTAATCAGAGACATTCATGCCACAATTTTAAGAAGCTCTTTCTCAAGCTGGCGACATCGTAGAGCAGGAGGTTGCGCAAATACGAGTAATGCTGGCATTTGTTTGGCGAGTCTCGAGCACTACAAGGCTACTCATCATCCTTGA 2007 0.4235 MTTVCRWAAFVDGSDVAEAGSHASGSTSPRVRHSLSQMHQEEVSEPDIGEWENAENPHTMLYQKYAPKGLKTLLNFARKSKAEVGTARLFRMTNSVGDGNKLHFTPDDVSDTLPVPADSNMHNSSPSIHVLESKDSGKFVVALTDPVSIFASKRAVNSLLLSELLEKLKGWMDSTSRARSIPVIQLFYRLSSVVGGPFIDSSKPDSLDLEKLIKWSLDEININRPFVARTRSSIREVAILAFMFFTLMLRNWHQPGSDVSIPIHNGTTDVHHKNVIQLSSSISKTLIDDQEKNDFASQLLQACDSLRQQSFNHVNGTDLGGDNYEVQILLLRRSQSHRAILSSLSSILTSAARRRVDASRVSNMDSGDSRDPRCRLLEKEEHKPFLICALTPLHKPTCVSMYHQQFSYCVTQFVEKDVKLADIVIRGLLKYWPVTISAKERRAYRDATKIVGLKPLRLIHDCTATALSYGIYKTNFQSEGSTYVAFIDIGQCDTQVCIAAFQFMQMKILSHTFDRSLGGRDFDEACIRLRAACEKLKKVLSANPEAPLNIECLMDEKDFKGFITREEFESLASGLLERISKPCSQALLESGLNAEKIVSVELVGSGSRIPVVTLVVFPMIAVIRDIHATILRSSFSSWRHRRAGGCANTSNAGICLASLEHYKATHHP* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2292 668 MobiDBLite consensus disorder prediction 18 49 - -
Psa1g2292 668 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 411 615 - -
Psa1g2292 668 SUPERFAMILY ARM repeat 379 448 IPR016024 -
Psa1g2292 668 Pfam Hsp70 protein 525 616 IPR013126 GO:0005524|GO:0140662
Psa1g2292 668 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 379 440 IPR002554 GO:0000159|GO:0007165|GO:0019888
Psa1g2292 668 Gene3D - 579 613 - -
Psa1g2292 668 Gene3D Actin; Chain A, domain 4 525 578 - -
Psa1g2292 668 Gene3D - 372 452 IPR011989 -
Psa1g2292 668 MobiDBLite consensus disorder prediction 20 34 - -
Psa1g2292 668 SUPERFAMILY Actin-like ATPase domain 479 616 IPR043129 -
Psa1g2292 668 PANTHER HSC70CB, ISOFORM G-RELATED 411 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2292 Psa-Chr1 178465546 178471026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2292 384 612 Calmodulin-binding Proteins AT3G09440 28.736 3.71e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2292 K10691 - gmx:100776325 328.561