Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2282 ATGGTTGGATTGGAACTCATACCGATAGGTACAATTTTGGCTGTTTTAACTAGCCAGGTTGTGAGAACAGCTAATGCTGCAAAAGATGTTCTTATCGACAAAGAAAGTTTTAATATCCTTTCGAAACACCTACTTGATATTGCACCAATCCTAAAGGAATTGCAGCTTCAGGAACTGAATGAGTCACAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTAAAACAAGCAAGTAATTTGGTTGAGAAGTACAGGAACAGCGGCCGTTTTTACTTACTTATGAAGTGTCGTTACATAGTCAAGGAAGTTGAACAAGTCATTAGGGATATCGGAAGGTCTCTAGCTGCATTGTCTCTTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAAGTCAACAGACTACAGAGTGAGATGCAAAGGGCCGAGTTTGAGGCTTCACAATCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAGGCTTTTGTGAACGATATGCTCGAAGAGATAGCAAGGGCAGTCGGGGTGCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCAAACAGGAAAGAAAGAGCAGAAGTTATATTTTTGGAGCAGATCATTTTGCTACTCTCTCAAGCTGATACAGCAAGTGATTTCGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAATAGAAAGATATGGTTCAAGGGAAAAATATATTCCGCCACTTAATTCTTTCTGTTGTTCGATAACTGAAGCTGTTATGGTAGATCCTGTCAGTCTTTGCACCGGTACTACATGTGAGAGATCTGCCATCGAAGTTTGGTTTGATGATGGCAATATGACTGACCCGAAAACGAAAGAGGTTCTTGAAGATACTACCTTAAGGTCGAACATTCGGTTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTGCTGCTTCAGAATAAAGTCTATCAGGGAAAACTTATTATCTAATTCTGGCTTATTATTGCACGAGTCCTTGAGTCAGATGCAGGCTCTCATAAAAGAGAATTCGATTAATAAGGATTGGATTTCTATAGGAGAACTTACTGATATTATCATCTCCATCCTTGGGAACTCTGATTCTATAGATGTCAAGATGAAGATCTTGATTACTTTGAAGGGTGCTGTTGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGCGATACATTATTTCCTGCTTACACAATGACTCTAGAGTAATAAAGGAAGCAGTTGATTTGCTCTATGAATTGCTTCAAGACCGTTCTGGTTGGAATAAAAGTTTCTGCGAAAAACTTTCTGAGCATCCCAGCACGGTCAATTACCTTGTTACCTTTCTAAACGGACCTGTCAGCGATTCAATTGAAACTGCAGAAAAGATTTTGACGGAGCTTTTTGAAATAGATGAGGAAAATATTTGCTGTGCTGCTAAGTTTGGCTGGAAGTTAACGGTTATGAATTCCTGTTGGTATTGGTTAGAAATCAAATTGTTAACATTGCTAGGGTCCAATCTGGAATTTGGTCTGTGCTTTACAACTTGGTTCAAGCCTGCACAGGCTCTCATCGAAGACCAACATATAGCTAATGCCGCATTGCATCATGGCTTGTAG 1692 0.3983 MVGLELIPIGTILAVLTSQVVRTANAAKDVLIDKESFNILSKHLLDIAPILKELQLQELNESQAARVALESLESDVKQASNLVEKYRNSGRFYLLMKCRYIVKEVEQVIRDIGRSLAALSLANTEVLSRISDQVNRLQSEMQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFVNDMLEEIARAVGVPVEPSEISKEIASIRWEKEEAANRKERAEVIFLEQIILLLSQADTASDFEEVKKQYFQRVQVIERYGSREKYIPPLNSFCCSITEAVMVDPVSLCTGTTCERSAIEVWFDDGNMTDPKTKEVLEDTTLRSNIRLRESIVEWRELNCCFRIKSIRENLLSNSGLLLHESLSQMQALIKENSINKDWISIGELTDIIISILGNSDSIDVKMKILITLKGAVEGHARNKEKVVESQGWRYIISCLHNDSRVIKEAVDLLYELLQDRSGWNKSFCEKLSEHPSTVNYLVTFLNGPVSDSIETAEKILTELFEIDEENICCAAKFGWKLTVMNSCWYWLEIKLLTLLGSNLEFGLCFTTWFKPAQALIEDQHIANAALHHGL* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2282 563 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Psa1g2282 563 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 508 - -
Psa1g2282 563 SUPERFAMILY ARM repeat 339 499 IPR016024 -
Psa1g2282 563 Gene3D - 339 512 IPR011989 -
Psa1g2282 563 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Psa1g2282 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 334 IPR013083 -
Psa1g2282 563 Coils Coil 127 154 - -
Psa1g2282 563 SUPERFAMILY RING/U-box 247 331 - -
Psa1g2282 563 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Psa1g2282 563 Coils Coil 62 89 - -
Psa1g2282 563 Gene3D - 9 123 IPR036537 GO:0007166
Psa1g2282 563 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 508 - -
Psa1g2282 563 CDD RING-Ubox_PUB 265 307 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2282 Psa-Chr1 176881771 176883900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2282 264 507 U-box Gene Family AT1G20780 32.016 2.03e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2282 - - gsj:114377374 815.068