Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2264 ATGGGGAAAAAAGGGAGTTGGTTTTCTGCAGTGAAGAAAGTTTTCAGTCATGATTCCAGAAAAGACAAGAAAAGCCAGAAATCAAAGAAAAAAAGTACTCAACCGGAGACAGAAGTGAAATCAGAAGTAGTACAAGTTTCTGTTCCACAGATAGAAGATGTGAAATTAAGTGAGTTAGAGAATGAACAAAATAAACAGGCTATTTCTCTTGCTTTTGCCACTGCTGTTGCGGCGGGGGCGGCTGTTGCTGCTGCTCAGGCTGCTGCCGAGGTTGTTCGTCTCACGAGTATGCCTCATTACCCTGCAAAGAGTATGGAAGAATTGGCTGCTATCAAGATTCAGACCGCGTTCCGTGGATATTTGGCGAGAAGAGCTTTGCGCGCATTGAGAGGTTTGGTGAGGTTGAAGACAATGATACAAGGACAATCTGTTAAACGGCAAGCAGGCAGCACCTTAAGATGTATGCAAACTCTAGCAAGACTGCAGTCACAGGTTCGCGAAAGGCGAGTTCGAATGTCCGAGGAGAATCAGGCTCGTCAGCGCCAATTACAACAGAAATGTGAAAAAGAACTAGTAAAGTTGCAAACTTCTCAGGTTGGAGAAGAATGGGATGATAGCTTGCAGTCAAAGGAACAAATTGATGCAAAATTATTGCAAAGACAAGAAGCTGCTTTCAAAAGAGAGAGGGCTTTGGCCTATTCATTTTCACATCAGCAAACATGGAAGAGCTCTTCAAAATCTATAAACCAAACATTTATGGATCCAAACAATCCCCACTGGGGATGGAGTTGGTTAGAGAGATGGATGGCGACTCGACCATGGGAAGTCGAAAGCGTCATTATGAATCACAGACCTTCTCCGGTCGGCCAAAAATTAAGAAGACAAAGCACTCAGAATTCTCCTTCAACTTCAAAGACAAAGCCATCAAGCTCAAAGGGTGAAACTATTGATGACTCAAGAAGTATGTTTAGTGTTCATTCCGAACGGTATCGAAGATATAGCAGCATTGCAGGATCGTCGGTTAGAGATGACACGAGCGTTGAAAGCTCGCCAGTGTTTCCAAGTTACATGGCACTCACTAGTTCTGCAAAGGCAAAGTCCAAACTAATGCAAAAAACATCGCCATCAGCATCTTCGGTTTCTGCAAGGAAGAGGCTTTCTTTCCCTGCTTCTCCTGTTGGTTCGAGAAGGTACTCCGGTCCACCTAAGGTGGAAATATAA 1221 0.439 MGKKGSWFSAVKKVFSHDSRKDKKSQKSKKKSTQPETEVKSEVVQVSVPQIEDVKLSELENEQNKQAISLAFATAVAAGAAVAAAQAAAEVVRLTSMPHYPAKSMEELAAIKIQTAFRGYLARRALRALRGLVRLKTMIQGQSVKRQAGSTLRCMQTLARLQSQVRERRVRMSEENQARQRQLQQKCEKELVKLQTSQVGEEWDDSLQSKEQIDAKLLQRQEAAFKRERALAYSFSHQQTWKSSSKSINQTFMDPNNPHWGWSWLERWMATRPWEVESVIMNHRPSPVGQKLRRQSTQNSPSTSKTKPSSSKGETIDDSRSMFSVHSERYRRYSSIAGSSVRDDTSVESSPVFPSYMALTSSAKAKSKLMQKTSPSASSVSARKRLSFPASPVGSRRYSGPPKVEI* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2264 406 Gene3D - 61 133 - -
Psa1g2264 406 MobiDBLite consensus disorder prediction 364 406 - -
Psa1g2264 406 SMART iq_5 105 127 IPR000048 GO:0005515
Psa1g2264 406 MobiDBLite consensus disorder prediction 289 310 - -
Psa1g2264 406 MobiDBLite consensus disorder prediction 1 43 - -
Psa1g2264 406 MobiDBLite consensus disorder prediction 285 321 - -
Psa1g2264 406 Pfam IQ calmodulin-binding motif 109 127 IPR000048 GO:0005515
Psa1g2264 406 MobiDBLite consensus disorder prediction 364 385 - -
Psa1g2264 406 PANTHER IQ-DOMAIN 5-RELATED 1 280 - -
Psa1g2264 406 PANTHER IQ-DOMAIN 5-RELATED 291 405 - -
Psa1g2264 406 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Psa1g2264 406 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 280 - -
Psa1g2264 406 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 291 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2264 Psa-Chr1 175222133 175225090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2264 1 405 IQD Protein Family AT5G03040 47.682 2.17e-120 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2264 - - cam:101501235 499.975