Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2260 ATGGCAGATCTTGTTAACTACGGGAATGCTGATCGTAATATTGAGCAAGCGTTGATTGCTTTGAAAAAGGGGGCTCAACTACTTAAATATGGTCGTAAGGGAAAACCAAAATTTTGTCCATTTAGACTCTCACATGATGGATCATCTTTAATCTGGATTTCAAGCAGCGGCGAAAAACAACTAAAGCTATCTTCTGTCTCAAGAATCATTCCTGGACAAAGAACTGCTGTTTTCCAACGGTACCTGCGTCCTGAGAAGGACTATGTGTCTTTTTCACTTATTTATAAGAACGGAAAGCGGTCTCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGACGTGTGGATTTCTGGTCTCAAAAAACTGATATCCTCAGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGACGGGGGCCTCAATCTTGATGATAACAAAGACTTAACATCCAATAGTCCAAGTGACAGTTCAGCTAGTGCGTCACTAGACATCAGTTCTCCTGACATTTCCGCGAGTCTTCCAAATACTTCACCTAACTCCTTTAGGCCTGACAATACCTTAAATACCGAAAGGTCACATGCACCATCTGACTCAACAAATATGCTACTAAAAGGATCTAGCAATGATACTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGCACATCTAGTCATGGATCTGCACATGATGACTATGATGCTTTGGCAGATGTATACATATGGGGGGAAATCATCTGCGAAAACGTGAAAGTTGATGCCGATAAAAGCGTCCACTATATCAGCCCAAGGGCAGATGTGCTTCTCCCGAGACCACTGGAATCTAATGTAGTTTTAGACATACAACATATAGCATGTGGTGTTAGACATGCTTCGTTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGACGCCTTGGGCACGGCGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTACAACGGTTGACTTTGTTGCGTGCGGGGAGTTCCATTCCTGTGCTGTTACTATGACTGGGGAACTATATACATGGGGTGACGGTACTCATAATGCAGGGCTGCTTGGTCATGGCTCTAATGTTAGTCAGTGGATGCCAAAGAGAGTTGAGGGTTCATTAGAGGGCCTTCAAGTTTCATTTGTTGCTTGCGGTCCATGGCACACAGCCTTGATTACTTCAACCGGGAAGCTCTTTACATTTGGCGATGGAACTTTCGGTGTCTTAGGACATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGAGTCATTATTAGGGTTGAGGACGATAGCTGTTGCATGTGGAGTATGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACAATCTATTGCTAGTTTATCGTCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGGCATGGGGACAAGGAGGCACGGCTTACACCAACTTGTGTGCCTGCTATAATCGATTATGATTTTCAAAGAATTGCTTGTGGGCACAGTTTGACAGTAGGACTTACGACATCCGGACGAGTTTTTACCATGGGAAGTACAGTTTACGGTCAGCTTGGGAATCCTCAGTCTGATGGAAAGCTTCCATGCTTGGTTGGAGATAAGATTGCGTCCGAATCCGTTGAAGAAATCGCTTGTGGTGCATATCATGTGGCTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGTAAAGGTTCAAACGGAAGATTAGGTCATGGAGATATTGAAGATAGAAAAACACCAACTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAATTACTCTGCCGCCATATGCCTTCATAAATGGGTATCTGGTGCGGAGCAGTCTCAGTGCTCAGCATGTAGACAAGCATTCGGCTTCACTAGAAAGCGGCACAATTGTTATAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCAAAGAAAGCATTAAGAGCGGCACTGTCTCCTAACCCTGATAAGCCCTACCGTGTGTGTGATTCTTGTTATGCCAAATTGAGCAAGGTTGCAGAAGCTAACAATCATAATCGGAGGAACACTTTACCGCGTCTCTCAGGTGAAAACAAGGATAGGTTAGACAAGTCTGAGCTTAGATTGTCTAAGGCTGTTGTTCCTTCAAATATGGATTTGATAAAGCAGCTAGATAATAAGGCAGCCAAACAAGGAAAGAAAGCTGATACATTCTCACTATACTCACAAACCCCTTTGCTACAGCTGAGAGACGTTGTCTTCTCCACTGCTGCTGAGCTGAGAAGAACAACTCCAAAACTGGTGATTACACCGTCGAGAGTAAGTTCTAGATCGACATCCCCTTTCTCTAGAAGATCAAGCCCTCCTCGTTCAGCTACGCCTATTCCAACAATGTCGGGACTTTCGTTCTCCAAAAATACTGCTGATAGTTTGAAGAAAACAAACGAACATTTAAATCAAGAAGTGCAGAAGTTACGTTCTCAGGTTGAGAACCTGAAACAAAGATGTAAACTGCAAGAATTAGAACTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATGGCACTTGCTACCGAGGAATCTACTAAAAGAAAAGCTGCAAAAGAAGTTATGAAGTCACTCACGTCACAGATCAAAGATCTAGCTGAGAAGCTTCCTCCTGAAGTTTATGATGCTATGAACATTAGACAAGCGTACCTACCGAATGGTCTCGAGTCAAACGGAAATCACTATCTGGATTCAAACGGGGAGCAGCACGCGGATGCAGAATCAATCATAAGTGGCTCTAGTTTAGCCTCCATAAGACTTGAGTCCTCTCTGTTCAGAACTGCAGGTGATTTTCCAGGAGCCAATGGAACTAACCTCCACCAGCAAATCCGGGGTATTGTTTCCTCTAACGGGACTGGCAATTATCCAGATATTAAATCGCCGAATGGCAGCGGTGTAATTCAGTCAAGCAGTAGTAGCTTGTCAGATATCGTTGAAGGTAGGGATACCGGGAATTCCCGTGATGATGAGAGTGGTTTGAAATCAACAGATGCTGCACTGGCTACTAATAGTAATAATCAAGTTGACGCAGAATGGATTGAACAGTATGAACCTGGTGTGTATATAACACTGGTGGCCATGCACGATGGAACAAGAGATCTGAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGAACCAAGCAGAAATTTGGTGGTCAGAGAACCGGGAGATGGTATACGAAAAATACAATGTTCGTAACTCAGACAAGTCTTCTAGCCAAGCACCGCATAAGTCAGAGGTTGGCGGTTCTCCTATCTCCCAAACATAG 3357 0.4358 MADLVNYGNADRNIEQALIALKKGAQLLKYGRKGKPKFCPFRLSHDGSSLIWISSSGEKQLKLSSVSRIIPGQRTAVFQRYLRPEKDYVSFSLIYKNGKRSLDLICKDKVEADVWISGLKKLISSGQGGRSKIDGWSDGGLNLDDNKDLTSNSPSDSSASASLDISSPDISASLPNTSPNSFRPDNTLNTERSHAPSDSTNMLLKGSSNDTFRVSVSSAPSTSSHGSAHDDYDALADVYIWGEIICENVKVDADKSVHYISPRADVLLPRPLESNVVLDIQHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTTVDFVACGEFHSCAVTMTGELYTWGDGTHNAGLLGHGSNVSQWMPKRVEGSLEGLQVSFVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVSYPREVESLLGLRTIAVACGVWHTAAVVEVIATQSIASLSSGKLFTWGDGDKNRLGHGDKEARLTPTCVPAIIDYDFQRIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIASESVEEIACGAYHVAVLTSKNEVYTWGKGSNGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALSPNPDKPYRVCDSCYAKLSKVAEANNHNRRNTLPRLSGENKDRLDKSELRLSKAVVPSNMDLIKQLDNKAAKQGKKADTFSLYSQTPLLQLRDVVFSTAAELRRTTPKLVITPSRVSSRSTSPFSRRSSPPRSATPIPTMSGLSFSKNTADSLKKTNEHLNQEVQKLRSQVENLKQRCKLQELELQRSAKKTQEAMALATEESTKRKAAKEVMKSLTSQIKDLAEKLPPEVYDAMNIRQAYLPNGLESNGNHYLDSNGEQHADAESIISGSSLASIRLESSLFRTAGDFPGANGTNLHQQIRGIVSSNGTGNYPDIKSPNGSGVIQSSSSSLSDIVEGRDTGNSRDDESGLKSTDAALATNSNNQVDAEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAEIWWSENREMVYEKYNVRNSDKSSSQAPHKSEVGGSPISQT* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2260 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1092 IPR013591 -
Psa1g2260 1118 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Psa1g2260 1118 SUPERFAMILY RCC1/BLIP-II 237 624 IPR009091 -
Psa1g2260 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Psa1g2260 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Psa1g2260 1118 Coils Coil 813 861 - -
Psa1g2260 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Psa1g2260 1118 MobiDBLite consensus disorder prediction 989 1021 - -
Psa1g2260 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1099 - -
Psa1g2260 1118 CDD PH_PLC_plant-like 12 124 - -
Psa1g2260 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 696 IPR013083 -
Psa1g2260 1118 MobiDBLite consensus disorder prediction 782 811 - -
Psa1g2260 1118 Gene3D - 13 129 IPR011993 -
Psa1g2260 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Psa1g2260 1118 Gene3D - 186 455 IPR009091 -
Psa1g2260 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Psa1g2260 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Psa1g2260 1118 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Psa1g2260 1118 MobiDBLite consensus disorder prediction 1095 1118 - -
Psa1g2260 1118 Gene3D - 457 636 IPR009091 -
Psa1g2260 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Psa1g2260 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Psa1g2260 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Psa1g2260 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Psa1g2260 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Psa1g2260 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Psa1g2260 1118 Pfam Transcription factor BRX N-terminal domain 871 904 IPR027988 -
Psa1g2260 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Psa1g2260 1118 SUPERFAMILY FYVE/PHD zinc finger 623 699 IPR011011 -
Psa1g2260 1118 SUPERFAMILY PH domain-like 14 123 - -
Psa1g2260 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1099 - -
Psa1g2260 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Psa1g2260 1118 MobiDBLite consensus disorder prediction 173 203 - -
Psa1g2260 1118 SMART fyve_4 621 690 IPR000306 GO:0046872
Psa1g2260 1118 CDD FYVE_like_SF 632 685 - -
Psa1g2260 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Psa1g2260 1118 Coils Coil 876 896 - -
Psa1g2260 1118 PRINTS Chromosome condensation regulator RCC1 signature 299 315 IPR000408 -
Psa1g2260 1118 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Psa1g2260 1118 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Psa1g2260 1118 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Psa1g2260 1118 PRINTS Chromosome condensation regulator RCC1 signature 508 526 IPR000408 -
Psa1g2260 1118 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Psa1g2260 1118 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Psa1g2260 1118 MobiDBLite consensus disorder prediction 989 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2260 Psa-Chr1 174955338 174964226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2260 1039 1109 Major Intrinsic Protein MIP AT1G31880 45.070 2.61e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2260 - - gmx:100805364 1785.39