Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2254 ATGATTCAACCTCAAACCTATTTAAATGTAGCCGATAATAGTGGAGCGCGCGATTTGATGTGTATTCGAATCATAGGAGCTAGTAATCGACGGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTGCCAAATTCATCTTTAGAAAGATCTCAAGTCATCAGAGCTGTAAATGTACGTACTTGTAAAGAACTAAAACGTCGTAATGGTATAATAATAAAGTATGATGATAATGCAGCGGTTCTCATTGATAAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCCCGAAGAACTCAATTCATTCTTTCCAAATAA 339 0.354 MIQPQTYLNVADNSGARDLMCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLERSQVIRAVNVRTCKELKRRNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARRTQFILSK* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2254 112 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 106 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa1g2254 112 Pfam Ribosomal protein L14p/L23e 1 106 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa1g2254 112 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 1 106 - -
Psa1g2254 112 SMART Ribosomal_L14_2 1 110 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa1g2254 112 Hamap 50S ribosomal protein L14 [rplN]. 1 109 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa1g2254 112 TIGRFAM rplN_bact: ribosomal protein uL14 1 105 IPR005745 GO:0003735|GO:0006412|GO:0015934
Psa1g2254 112 Gene3D Ribosomal protein L14 1 111 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa1g2254 112 SUPERFAMILY Ribosomal protein L14 1 105 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2254 Psa-Chr1 172406779 172407117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2254 8 105 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 35.294 8.80e-15 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2254 K02874 - gmx:3989333 182.956