Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2252 ATGGAAGACTTTTGGAACATGATCTGTGATGACTTTGCTTGTTTTTCTTCACCTGGAGGAAAACATTATTGTTTCGATTTCGAGGTTCTGAATGATCCTTCCTCATGCATCAACCATTTGCTTATCATTTTCCTTGATCTGTTGTTGCTAATAATGCTGTCATTTGTCATGATTCAAAAGTGTTTGTTGCGGCCAATTCAAGGTCAGAATAGAGTGGAAAGGCATTCAAAGTTGCAGCTAGTTTCTGCAATAACCAATGTCTCTATTGGTTTGTCGCATTTGTGCTTAGGAATTTGGATTTTAGAGGAGAATTTAAGGAAAAATCTCACTGTTTTTTCTCTTAGTTTATGGATGCTAGAACTTCTTCAAGGATTCATATGGATGTTAGTTGGTTTGACTACAAGTCTTGTGTTGAACCAACTTCCAAGAACATGGATTTGGTTATTTTCAATGCTTATAGTCTTTGTTTCTAGTGTTTTATGTGCTTTGTCCTTATCTTATGCATTTAGCAGCCAAGAGTTGTCCCTTAAGGTGGCTTTAGATGTTCTATCTGTTTTGGGATCATTTTTGCTGCTTTTTTTCACATACAAAGCATGTAAGTATGAAAACATTGACAAGGAAGTTGATGGAAGTCTATATGCAGCTTTGAATAGTGAGGTCCATGATGTTGATCACGATAGCCATATAGGTGTAACGCCGTTTGCTGATGCAGGATTTCTTAGTACAATGTCATTTTGGTGGTTGAATCCTTTGATGAAAAAGGGTCAAGAGAAAACACTTGAGGTTGAGGACATTCCAAAATTGCGGGAGACGGATAGAGTAGAAGTATGTTATTCGTTATTTACAGATCTGTTGAATAGACGAAATCGAAAAGACATGTCATCTCGATCATTGTTGTTATGGACAATCGCTCTTTGTCATCGGAGAGAGATTTTGATCTCGGGATTCTTTGCATTTGTGAAGGTACTCACTTTATCTTCTTGTCCTCTACTTTTGAATGCCTTTGTATTGGTGGTCGAAGGTGATAAAAGTTTCAAATATGAAGGTCACTTATTGGCTATCACACTTTTGTTTACAAAGATTTTAGAATCCTTATCCCAGAGGCAATGGTATTTTCATTCTAGATTTATTGGTATGAAAGTTAGGTCATTAATTACAGCAGTTATTTATAAGAAACAACTGAAATTATCCAATGAGGCTAGATTGATTCACTCTAGTGGTGAGATAATGAATTATGTGAATGTGGATGCTTATAGAATTGGAGAATTTCCGTTTTGGTTTCACCAGACATGGACGATCGTTCTTCAGATATGTATCACTTTAGTCATTCTTTTCCGTGCAATTGGACTCGCGACAATTGCAACGTTGGTGACGATAATTTTGACTGTGCTTTTAAATACTCCGCTAGCAAAGCTACAACATAAGTCCCTAAGCAAATTACTTGTGGCCCAAGACGAAAGGTTGAAGGCAAATTCGGAGGCTCTTGTGAATGTTAAAGTGTTGAAGTTATATGCATGGGAAATCCATTTTAAAAATGCTATTGAAGATTTAAGAAATGTTGAACTAAAATGGTTATCTACAGTTCTGTTACAAAAGGCATATAGTGTTATTCTCTTTTGGTTATCACCTATTTTGGTCTCTGCTGCTACCTTTATGGCATGTTACTTGTTGAAAGTTCCTTTACGTGCAAATAATGTTTTCACATTCATCACAACTTTGCGCCTTGTGCAAGACCCTATTTCAACCATTGCAGAGGTTATTGGAGTGATCATTCAAGCAAAGATTTCTTTTTCTCGGGTTGTTAAATTTCTCGAGGCACCTGAGCTACAGACTACAAATGTTAGAAAAAAGTGTTATGATGAGAAGTTGAAGGGCTCAATTGTGATCAAGTCTGCGGATTTTTCATGGGAAGATAACAAGTTGAAAGCAACATTACGAAACATAAATTTAAATGTTAGTGGAGGCCAAAAAATAGCTATTTGCGGAGAAGTTGGCTCGGGAAAATCAACATTATTAGCAGCTATTCTTGGAGAACTCCCTAATACTAAGGGGAAAATCAGAGTTTATGGAAAGTTTGCGTATGTTTCACAAACAGCATGGATACAGTCAGGAACAATACAGGAAAATATTTTGTTTGGATTACCTTTTGGTTCTCAAAGGTATCAAGAATCACTTGATAGGTCTTCGTTGATGAAGGATCTTGATATGTTTGCGTGTGGTGATCTAACCGAGATAGGAGAGAGAGGTGTTAATCTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGAGCTCTTTATCAGAATGCGGATGTATATCTTTTAGATGATCCTTTCAGTGCTGTTGATGCGCACACTGCAAAAAAAGTGTTCAATGAATACATATTGGAAGGACTTATCGGAAAGACAGTCCTTCTCGTGACTCATCAAGTCGACTTTCTCCCTGTATTTGATTCTATTTTGTTGATGTCAGATGGGAAAATACAACATGCTTCTAATTATCATCATCTATTAACCTTTAGCCAAGAGTTTAAGGATCTGGTTGATGCACATAAAACGACAGGGACTCCTTCTCGACATGCACATGTTACTTCAACTTCTATACATTCAAAGCCTAGTAGAGAGATGATACAATATTTTACAAAGCAGTCGATTCATGTTGTAAATGGCGATCAGTTAATTAAGCAAGAAGAAAGAGAAAAAGGAGACACGGGATTCAAGCCTTATTTACAATATCTCAATCAAAAAAGAGGTTACATATACTTCTTTGCCACAATTCTTTCTCACCTGATGTTTGTGATTTTCCAAATGTTACAATACTCATGGATGGCTGCTAGTGTTGACAATCCTCGTGTCGGCAAATTGAAATTGCTTGGAGTTTACTTGCTAATTGCATTTAGTTCTACAATGTTCGTTATCCTTAGAAGTCTACTTGCAGTTGCGTTGGGTTTTCAATCATCAAAAGTTTTATTTAGACAGTTAATAAATTCTCTTTTTCGTGCATCGATGTCTTTCTATGACTCCACACCGTTGGGAAGGATACTTAGTAGGGTTTCATCCGATCTAAGCATCGTGGATCTTGATATCGCTTTTAGCCTCTCCTATTGTGTAGCATCCACTATAGCTTATTATGCAGGGCTAATAGTTTTAACATCCATCGCTTGGCCAGTCGTGTTTTTGTGTATACCAATGGCATATGTTATTATTCGTATACAAAGACACTACTATGCATGTGCAAAAGAACTTATGCGGATGAATGGGACAACGAAGTCCTCAGTAGCTAACCATGTATCTGAAACTGGTGCGGGAGCTATGACAATCCGAGCTTTTGAGGAGGAAGAACGGTTTTTCAACAAGAATCTTGATTTAATTGATCTCAATGCTGGTGCTTTCTTCCATAGTTTTGTCTCAAACGAGTGGTTTATCCAACGGTTAGAAACAATCTATGCAGTTGTTATTGCCTCTGCAACACTTTGCATTTCTATGCTTCCTCTAGGGACTTTAACTCCTGGTTTTGTTGGTATGATACTTTCTTATGGCCTTTCATTAAACAGTGTCTTAGTATATTCCATTCAATGTCAATGCATTCTTGCAAATTATATAGTATCTGTTGAGAGGATAAATCAATACACGAATATACCAAGTGACGTCGAAGAACGGATAGAAGGAAATCATCCTCCGCCTAATTGGCCAGATGTAGGAAAAGTAGAAATAAAAGATTTGAAGATACGATATAGGCTTAAAGGACCACTTGTATTGCATGGAATCACATGCACATTTGAAGGAGGTAACAAGATTGGTATTGTTGGTAGAACAGGTAGTGGAAAATCCACTCTAATAGGTGCTTTGTTTCGTCTTGTGGAGTCGGCGGGAGGAAAAATTTTAGTTGATGGAATAGACATATCGTCTATTAGGCTTCGTGACTTGAGGTCAAGTTTTGGTATTATACCTCAGGATCCTACTCTTTTCATTGGGACTGTTAGATATAATTTGGATCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTTCTTCGGAAGTGTCAATTACAAGAGTCCGTCGAAGGCAAAGGTGGCTTAGATTCGTCAGTTGTCGAAGACGGGTCAAATTGGAGCATTGGACAAAGACAACTATTTTGTTTAGGACGTGCTCTTTTGAGGAGAAGTAAGATATTGGTGCTAGATGAAGCGACTGCATCAATTGATAACTCAACAGATTTGATTCTTCAGAATACTATTAGGGCAGAGTTTGCAAACTGTACTGTCATAACAGTAGCACATAGGATACCAACTGTGATGAATTGCAACATGGTTCTTGCCATAAGTGATGGAAAATTGGTTGAGTATGATGAGCCATTAAAGTTGATAAACAGAGAAAGATCATTGTTTGGAAACCTTGTAAAAGAATACTGGTCTCAGTTTCAATCAGCATGA 4437 0.3737 MEDFWNMICDDFACFSSPGGKHYCFDFEVLNDPSSCINHLLIIFLDLLLLIMLSFVMIQKCLLRPIQGQNRVERHSKLQLVSAITNVSIGLSHLCLGIWILEENLRKNLTVFSLSLWMLELLQGFIWMLVGLTTSLVLNQLPRTWIWLFSMLIVFVSSVLCALSLSYAFSSQELSLKVALDVLSVLGSFLLLFFTYKACKYENIDKEVDGSLYAALNSEVHDVDHDSHIGVTPFADAGFLSTMSFWWLNPLMKKGQEKTLEVEDIPKLRETDRVEVCYSLFTDLLNRRNRKDMSSRSLLLWTIALCHRREILISGFFAFVKVLTLSSCPLLLNAFVLVVEGDKSFKYEGHLLAITLLFTKILESLSQRQWYFHSRFIGMKVRSLITAVIYKKQLKLSNEARLIHSSGEIMNYVNVDAYRIGEFPFWFHQTWTIVLQICITLVILFRAIGLATIATLVTIILTVLLNTPLAKLQHKSLSKLLVAQDERLKANSEALVNVKVLKLYAWEIHFKNAIEDLRNVELKWLSTVLLQKAYSVILFWLSPILVSAATFMACYLLKVPLRANNVFTFITTLRLVQDPISTIAEVIGVIIQAKISFSRVVKFLEAPELQTTNVRKKCYDEKLKGSIVIKSADFSWEDNKLKATLRNINLNVSGGQKIAICGEVGSGKSTLLAAILGELPNTKGKIRVYGKFAYVSQTAWIQSGTIQENILFGLPFGSQRYQESLDRSSLMKDLDMFACGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTAKKVFNEYILEGLIGKTVLLVTHQVDFLPVFDSILLMSDGKIQHASNYHHLLTFSQEFKDLVDAHKTTGTPSRHAHVTSTSIHSKPSREMIQYFTKQSIHVVNGDQLIKQEEREKGDTGFKPYLQYLNQKRGYIYFFATILSHLMFVIFQMLQYSWMAASVDNPRVGKLKLLGVYLLIAFSSTMFVILRSLLAVALGFQSSKVLFRQLINSLFRASMSFYDSTPLGRILSRVSSDLSIVDLDIAFSLSYCVASTIAYYAGLIVLTSIAWPVVFLCIPMAYVIIRIQRHYYACAKELMRMNGTTKSSVANHVSETGAGAMTIRAFEEEERFFNKNLDLIDLNAGAFFHSFVSNEWFIQRLETIYAVVIASATLCISMLPLGTLTPGFVGMILSYGLSLNSVLVYSIQCQCILANYIVSVERINQYTNIPSDVEERIEGNHPPPNWPDVGKVEIKDLKIRYRLKGPLVLHGITCTFEGGNKIGIVGRTGSGKSTLIGALFRLVESAGGKILVDGIDISSIRLRDLRSSFGIIPQDPTLFIGTVRYNLDPLSQHSDQEIWEVLRKCQLQESVEGKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNSTDLILQNTIRAEFANCTVITVAHRIPTVMNCNMVLAISDGKLVEYDEPLKLINRERSLFGNLVKEYWSQFQSA* 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2252 1478 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Psa1g2252 1478 Gene3D ABC transporter type 1, transmembrane domain 885 1218 IPR036640 GO:0005524|GO:0016021
Psa1g2252 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 850 IPR003439 GO:0005524
Psa1g2252 1478 SUPERFAMILY ABC transporter transmembrane region 300 605 IPR036640 GO:0005524|GO:0016021
Psa1g2252 1478 SMART AAA_5 654 835 IPR003593 -
Psa1g2252 1478 SMART AAA_5 1262 1453 IPR003593 -
Psa1g2252 1478 CDD ABCC_MRP_domain1 627 827 - -
Psa1g2252 1478 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524
Psa1g2252 1478 Gene3D ABC transporter type 1, transmembrane domain 298 611 IPR036640 GO:0005524|GO:0016021
Psa1g2252 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1463 IPR027417 -
Psa1g2252 1478 Gene3D - 625 856 IPR027417 -
Psa1g2252 1478 Pfam ABC transporter 1253 1400 IPR003439 GO:0005524
Psa1g2252 1478 Pfam ABC transporter 645 779 IPR003439 GO:0005524
Psa1g2252 1478 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 71 1478 - -
Psa1g2252 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1199 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2252 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 849 IPR027417 -
Psa1g2252 1478 SUPERFAMILY ABC transporter transmembrane region 909 1216 IPR036640 GO:0005524|GO:0016021
Psa1g2252 1478 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2252 1478 Pfam ABC transporter transmembrane region 920 1179 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g2252 1478 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 71 1478 - -
Psa1g2252 1478 CDD ABC_6TM_ABCC_D2 922 1211 IPR044726 GO:0140359
Psa1g2252 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1236 1469 IPR003439 GO:0005524
Psa1g2252 1478 Gene3D - 1219 1469 IPR027417 -
Psa1g2252 1478 CDD ABCC_MRP_domain2 1234 1453 - -
Psa1g2252 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2252 Psa-Chr1 172030439 172036231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2252 621 877 Calmodulin-binding Proteins AT2G36910 28.470 3.79e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2252 K05666 - gmx:100787314 1990.7