Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2236 ATGAAGATATCAAAGCAATGTTTTGGTGAAAAGCAGGACGCGATAAAGATGATCAACATTGAAGATTGGAAGGGTTATAACTGTGTTATTCACAGAGCTCGATGGAATTCATATGAGAAGAATATTCGTCATGGATGGTACGAATTTGCTAAAGAGAAGAAGCTTGAAGCTGAGGATGTATTATATTTTAGCATGAGTCCTCCAGAAGATTTTATGTGTTTTCATCATATCCCAATGAAGACATCAAAGCAATGTTTTGGTGAAAAGCAGGACGCGATAAAGATGATCAACATTGAAGATTGGAAGGGTTATAACTGTGTTATTTACAGAGCTCGATGGAATTCATATGAGAAGAATATTGGTCATGGATGGTACGAATTTGCTAAAGAGAAGAAGCTTGAAGCTAAGGATGTGTTATACTTTAGCATGAGTCCTCGGGAAGATTTTATGTATGTTCATGTAATTAGGGGTTGA 474 0.3629 MKISKQCFGEKQDAIKMINIEDWKGYNCVIHRARWNSYEKNIRHGWYEFAKEKKLEAEDVLYFSMSPPEDFMCFHHIPMKTSKQCFGEKQDAIKMINIEDWKGYNCVIYRARWNSYEKNIGHGWYEFAKEKKLEAKDVLYFSMSPREDFMYVHVIRG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2236 157 Pfam B3 DNA binding domain 75 156 IPR003340 GO:0003677
Psa1g2236 157 SUPERFAMILY DNA-binding pseudobarrel domain 70 156 IPR015300 -
Psa1g2236 157 SUPERFAMILY DNA-binding pseudobarrel domain 18 79 IPR015300 -
Psa1g2236 157 Gene3D - 1 72 IPR015300 -
Psa1g2236 157 Gene3D - 73 157 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2236 Psa-Chr1 170735119 170736535 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa1g2236 B3 5.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2236 - K24774 mtr:MTR_2g012700 49.2914