Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2220 ATGGACCATTCTCTCTTACCAAGCTTCCTCTACTCCTCGACGTCGTTGCCGCAGAAGAAGATCGTGGACGATGTCTCCACCTATCACCATGTTGCGGCGGAATCTTCCAAGTTTATGATTCCTTCTCCCAGCGAAACTGGGAAAAGGAACATAAAGATGTTCTCTCGTGATTACTATGTTGCTTGCGCCATTGGTGGAAGCATATGTTGTGGCTTCACTCACATGGCAGTCACACCTCTTGATCTTGTCAAATGTAACATGCAGATTGATCCTGCCAAGTACAAAAGCATCTCGTCTGGATTTGGAGTGATGCTAAAGGAACAAGGATTTAGAGGATTTTTCAGAGGATGGGCGCCTACGTTTATCGGTTACAGTGCACAAGGTGCTTTCAAATATGGATTCTATGAATATTTCAAGAAGTACTATTCAGATGTTGTTGGTCCAGAATATGCTACAAAGTACAAGACATTAATTTACCTTGCTGGAGCAGCATCTTCTGAGGTTATTGCTGATGTTGCACTTTGTCCATTTGAAGCTATTAAGGTTAGAGTTCAAACTCAACCCGGTTTCGCTAGAGGCCTTTCTGATGGCTTACCCAAATTGATCCGATCTGAAGGAGTATCAGGGTTGTACAAGGGAGTTGTGCCACTTTGGGGAAGACAGGTTCCATATACAATGATGAAGTTTGCTTCTTATGAAAACATTGTTGAGATGATCTACAAGCATGCCATCCCCACACCAAAGGAAGATTGCACCAAAACCCTACAACTTGGTGTGAGTGTTGTGGGAGGATATTTAGCCGGAATATTGTGTGCAGTTGTGTCTCATCCCGCAGATAATCTTGTATCTTTCCTAAACAGTTCCAAAGGGGCGACCGCTGCTGACGTGAGTGCCGCATTCATTTTATTTTGA 912 0.4364 MDHSLLPSFLYSSTSLPQKKIVDDVSTYHHVAAESSKFMIPSPSETGKRNIKMFSRDYYVACAIGGSICCGFTHMAVTPLDLVKCNMQIDPAKYKSISSGFGVMLKEQGFRGFFRGWAPTFIGYSAQGAFKYGFYEYFKKYYSDVVGPEYATKYKTLIYLAGAASSEVIADVALCPFEAIKVRVQTQPGFARGLSDGLPKLIRSEGVSGLYKGVVPLWGRQVPYTMMKFASYENIVEMIYKHAIPTPKEDCTKTLQLGVSVVGGYLAGILCAVVSHPADNLVSFLNSSKGATAADVSAAFILF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2220 303 Pfam Mitochondrial carrier protein 157 242 IPR018108 -
Psa1g2220 303 Pfam Mitochondrial carrier protein 59 143 IPR018108 -
Psa1g2220 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 57 141 IPR018108 -
Psa1g2220 303 PANTHER PHOSPHATE CARRIER PROTEIN 2 297 - -
Psa1g2220 303 Gene3D Mitochondrial carrier domain 58 299 IPR023395 -
Psa1g2220 303 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 2 297 IPR044677 GO:0005315|GO:1990547
Psa1g2220 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 154 238 IPR018108 -
Psa1g2220 303 SUPERFAMILY Mitochondrial carrier 58 289 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2220 Psa-Chr1 169213645 169216607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2220 3 295 Chloroplast and Mitochondria Gene Families AT5G14040 67.097 3.22e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2220 K15102 - gmx:547633 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g2220 1 169213645 169216607 Psa1g2220 1 169213645 169216607 ECH
Psa1g2220 1 169213645 169216607 Psa3g2185 3 191086819 191091048 ECH