Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2215 ATGTCATGTCTTCTTTTGTTCTCTTATGCGTTTGTTGTAATGGTCACATTACCTCATGCTGCAGCACAAAACGATGACAGCCAAGTAGATGCTCTGTTGAAGTGGAAAGCAAGCCTTGACAACCAAAGCAAGGCGTTGCTCTCTTCATGGATTGGTAATAATCCATGTGGTTGGGAGGGAATCAGATGTGATAATAACTCTAAATTCATCTACAAGATAAATCTCAACAATATGGGATTAAGAGGTACCCTTCGTAGTCTCAATTTCTCATCATTTCCAAATGTCCGTCATTTAGCTTTAAGAAACAATTTTTTTTATGGAGTTGTTCCACACAATATTGACAAGTTAGTCAACCTCGAGAAACTAGTTCTTTATAATAATAGTTTTTCTGGCTCCATTCCTCGGGAAATTTTCAAATTGATCAAACTTGAGACTCTAAATCTTGGTAATAATAGTTTTTCTGGCTCCATTCCTCGGGAAATTTTCAAGTTGATCAAACTTGAGACTCTAAATCTTGGTAATAATAGTTTTTCTGGCTCCATTCCTCGGGAAATTTTCAAGTTGATCAAACTTGAGACTCTAAATCTTGGTAATAATTATATTTCTGGCTCCATTCCTCGGGAAATTTTCAAGTTGATCAAACTTGAGACTCTAAATTTTGGTTATAATTATATTTCGGGCTCCATTTGTGGTGAAATTGGAAAGTTGATCAAACTCAAGAGACTATATCTTGAAACTAATAGTATTACTGGCTCCATTCCTCGAGAAATTGGATCTTTAAACCAACTCATTGAACTTGATTTGTCTCACAACCATCTCTCTGGCCCAATCCCTTCGACCATTGGAAACTTGACCAATTTGAAATATCTTTATCTTTATAAAAACAATCTCACTGGTATGATCCCAATTGAAGTCACAAAACTCAATTCTCTTTTACTAATCCAATTGTCGACAAATAACCTCTTCGGACCAATACCATCATCTATAGATAACTTGATTCATTTGAATTCTATTTGGCTTTCTGAAAATAACCTGTCCGGACCAATTCCACCATCTATAGGTAATCTGGTTAATTTGAACTCAATTTACCTTTACCAAAATAACCTTTCCGGACCAATCCCTTCATCCATGGGTAATTTGATCAATTTGAATTATATTTACCTTGAAATCAATAATCTTTCTGGACCAATTCCTCCGACTATCGGAAATTTGACAAAACTCAGTAGGTTAGCACTTTTCTCAAATATACTAAGTGGCAATATTCCCACCGAAATGAATAGGCTTACCAATATTGAAGTTTTAAGTCTAAGTTATAATAACTTCGTAGGTCAATTACCTCACAACATTTGTGTTGGTGGTAAGTTGAAATGGTTCACAGCTTCCGGAAATCATTTTACAGGACTAGTTCCAAAGAGTTTGAAGAACTGTTCCAACCTTTTTAGAGTTAGGCTCCAAAAAAATCAACTAACTGGTAATATAACAGATAGCTTTGGTGTGTATCCAAATTTGGTTTACATAGAATTAAGTGATAATCATTTTTATGGTCATCTATCACCAAATTGGGGAAACTGCAAAAATCTCACATGCCTTAAAATTGACAATAATAATTTAACAGGAACCATTCCACCAGAATTGGGTAGAGCAACAAATTTAAATGAACTTAACTTGTCTTCCAACCATCTTACAGGAAGAATTCCAAAGGAGCTAGGAAATTTAGGTTCATTGCTCCAACTTTCAATAAGTAACAATCGTCTTTTAGGACAAGTTCCTGTACAAATTGCTTCATTGCAGAAATTGTATAACTTGGATCTTTCATCAAACAACTTAAGTGGTTCTATCCCAAAACAAGTTGGAAAGTTGTCAATGTTATTGCACTTGAAATTGGGCAAAAATAAATTTGAAGGAAACATTCCTAGTGAGATTGGAGAACTAAAATATATTGAAGATCTTGATCTAGTGGAATGTCTTGAATGGAACCAATACCAACAATGCTGGGACACCTTGACAATTGTTGATATATCATACAATCAATTGGAGGGTCCGATTCCAAGCATTTTAGCCTTCCAAAAAGCTCCAATTGAAGCATTCAGAAATAACAAAGGCTTGTGTGGTAATGTTTCTGGCCTAATGTCCTGCTCAACATCAACTGGAAAATTTCATAGTGATAAGACCAAAAAAGTTTTGGTGTTAGTTTTATCCCTCACTCTAGGCACTCTGTTGTCAGCATTATTTGTTTATGGGATCAAAATATCCTATCGTTGTTGTCGAGCTTCAAGAACAATCGAATGCAAACCTACTGAAGAGTCACATGATCAAAACCTATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAATCATCTCATTGGGGTTGGAGGGCATGGAAGTGTTTACAGAGCAGAGTTGCTTACAGGACAAGTTGTAGCTGTGAAGAAACTTCACTCATTGCAAAATAGAGAAATTTCAAATCTGAAAGCTTTTGCAAGTGAGATCAAAGCTCTAACAGAAATCCGACATCGAAACATTGTGAAGTTGTATGGGTATTGTTCACATCCATTGCATTCGTTTTTGGTTTATGAGTTCTTGGAGAATGGCAGTGTGGACAAGATCTTGAAAGACGATGAGCAAGCAACTAGATTTGATTGGAATAGAAGGGTTTATGAGTTCTTGGAGAATGGCAGTGTGGACAAGATCTTGAAAGACGATGAGCAAGCAACTAGATTTGATTGGAATAGAAGGGTGAATGTCATTAAGGATGTTGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCTCCTATTGTTCATCGCGATATTTCGAGCAAGAATGTCATTTTGGATTTGGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAGTTTCTAAATCCGGATTCATCCAACTGGACCTCTTTTGTTGGAACATTTGGATACGCTGCTCCAGAACTTGCATACACAATGGAAGTAAGTGAGAAGTGTGATGTGTACGGTTTTGGAGTATTAATCTTGGAAATAGTTTTTGGAAAGCACCCTGGAGATTTTGTATCAACAATGGTGCAATCAAGTGGTTTAGGTGTTGAAATTGATGACTTGTCATTGATTGATAAGTTGGATAAACGTCTCCCTCCTCCTAGGAATTATATTGGGAAAGATTTGGTATCAATTATAAGGATTGCATGTCATTGCTTGACAGAGAGCCCGCGCTATCGCCCTACAATGGAACATGTTTGTAAGGAGATTGTAATGTCAAAGTCATCTTCAAGGGGTTAA 3315 0.3623 MSCLLLFSYAFVVMVTLPHAAAQNDDSQVDALLKWKASLDNQSKALLSSWIGNNPCGWEGIRCDNNSKFIYKINLNNMGLRGTLRSLNFSSFPNVRHLALRNNFFYGVVPHNIDKLVNLEKLVLYNNSFSGSIPREIFKLIKLETLNLGNNSFSGSIPREIFKLIKLETLNLGNNSFSGSIPREIFKLIKLETLNLGNNYISGSIPREIFKLIKLETLNFGYNYISGSICGEIGKLIKLKRLYLETNSITGSIPREIGSLNQLIELDLSHNHLSGPIPSTIGNLTNLKYLYLYKNNLTGMIPIEVTKLNSLLLIQLSTNNLFGPIPSSIDNLIHLNSIWLSENNLSGPIPPSIGNLVNLNSIYLYQNNLSGPIPSSMGNLINLNYIYLEINNLSGPIPPTIGNLTKLSRLALFSNILSGNIPTEMNRLTNIEVLSLSYNNFVGQLPHNICVGGKLKWFTASGNHFTGLVPKSLKNCSNLFRVRLQKNQLTGNITDSFGVYPNLVYIELSDNHFYGHLSPNWGNCKNLTCLKIDNNNLTGTIPPELGRATNLNELNLSSNHLTGRIPKELGNLGSLLQLSISNNRLLGQVPVQIASLQKLYNLDLSSNNLSGSIPKQVGKLSMLLHLKLGKNKFEGNIPSEIGELKYIEDLDLVECLEWNQYQQCWDTLTIVDISYNQLEGPIPSILAFQKAPIEAFRNNKGLCGNVSGLMSCSTSTGKFHSDKTKKVLVLVLSLTLGTLLSALFVYGIKISYRCCRASRTIECKPTEESHDQNLFAIWSFDGKMVYENIIEATEEFDNNHLIGVGGHGSVYRAELLTGQVVAVKKLHSLQNREISNLKAFASEIKALTEIRHRNIVKLYGYCSHPLHSFLVYEFLENGSVDKILKDDEQATRFDWNRRVYEFLENGSVDKILKDDEQATRFDWNRRVNVIKDVANALCYMHHDCSPPIVHRDISSKNVILDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVSEKCDVYGFGVLILEIVFGKHPGDFVSTMVQSSGLGVEIDDLSLIDKLDKRLPPPRNYIGKDLVSIIRIACHCLTESPRYRPTMEHVCKEIVMSKSSSRG* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2215 1104 Gene3D Ribonuclease Inhibitor 309 379 IPR032675 -
Psa1g2215 1104 Gene3D Ribonuclease Inhibitor 187 308 IPR032675 -
Psa1g2215 1104 SUPERFAMILY Protein kinase-like (PK-like) 778 1094 IPR011009 -
Psa1g2215 1104 Gene3D Phosphorylase Kinase; domain 1 758 874 - -
Psa1g2215 1104 ProSitePatterns Tyrosine protein kinases specific active-site signature. 948 960 IPR008266 GO:0004672|GO:0006468
Psa1g2215 1104 Pfam Leucine Rich Repeat 142 162 IPR001611 GO:0005515
Psa1g2215 1104 Pfam Leucine Rich Repeat 263 284 IPR001611 GO:0005515
Psa1g2215 1104 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 899 1101 - -
Psa1g2215 1104 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 667 899 - -
Psa1g2215 1104 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 167 - -
Psa1g2215 1104 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 168 323 - -
Psa1g2215 1104 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 308 653 - -
Psa1g2215 1104 SUPERFAMILY RNI-like 345 687 - -
Psa1g2215 1104 SMART LRR_typ_2 236 260 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 284 308 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 189 212 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 428 452 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 164 188 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 332 356 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 549 572 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 116 140 IPR003591 -
Psa1g2215 1104 SMART LRR_typ_2 596 620 IPR003591 -
Psa1g2215 1104 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Psa1g2215 1104 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Psa1g2215 1104 Gene3D Ribonuclease Inhibitor 380 454 IPR032675 -
Psa1g2215 1104 Pfam Protein tyrosine and serine/threonine kinase 799 1094 IPR001245 GO:0004672|GO:0006468
Psa1g2215 1104 Gene3D Ribonuclease Inhibitor 455 715 IPR032675 -
Psa1g2215 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 667 899 - -
Psa1g2215 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 308 653 - -
Psa1g2215 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 168 323 - -
Psa1g2215 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 167 - -
Psa1g2215 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 899 1101 - -
Psa1g2215 1104 ProSiteProfiles Leucine-rich repeat profile. 190 212 IPR001611 GO:0005515
Psa1g2215 1104 ProSiteProfiles Protein kinase domain profile. 796 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2215 1104 ProSitePatterns Protein kinases ATP-binding region signature. 802 825 IPR017441 GO:0005524
Psa1g2215 1104 SUPERFAMILY L domain-like 26 311 - -
Psa1g2215 1104 Gene3D Transferase(Phosphotransferase) domain 1 903 1103 - -
Psa1g2215 1104 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2215 Psa-Chr1 168529831 168533300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2215 5 996 Receptor kinase-like Gene Family AT4G08850 39.126 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g2215 PK_Tyr_Ser-Thr 6.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2215 - - mtr:MTR_1g040615 1235.71