Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2214 ATGGCATCACTCAACAACAACCAAGCCAAATTTGATCTTGAACAACAATCCTCAACAATAACAACATTAGAAGTTGAAACAAAAGATTTTGACTATTCAAAAAGATCACAATGGCTACGCGCCGCAGTCTTAGGCGCTAACGACGGATTAGTCTCTACAGCGTCGCTGATGATGGGAGTTGGCGCGGTCAAACAAGATATCAAAGCTATGATTTTAACCGGTTTTGCCGGGTTGGTAGCCGGTGCATGTAGCATGGCTATAGGTGAGTTTGTTTCGGTTTACTCGCAATTGGATATCGAAGTTGCTCAAATGAAAAGAGAGAAAGAAAGAGGAAGAGAAGTTGGTGATGGTGAAGAGAAAGAAAGTTTGCCTAATCCTTTACAAGCTGCAGCTGCTTCAGCTTTAGCTTTTTCTATTGGTGCAATGGTGCCATTGCTTGCAGCTTTTTTTATAAGTGATTATAAGGTGAGAGTTGGTGCTGTTGTGGCTGCAGTAAGTTTTGCTTTGGTTGTTTTTGGTTGGTTTGGGGCTGTGTTGGGTAAGGCTCCAATTTTTAGGTCTATTTTAAGGGTTTTGATTGGTGGTTGGGTTGCTATGTCCATTACTTTTGGCCTTACCAAGTTAATCGGGACAAGTGGTCTTTAG 645 0.4186 MASLNNNQAKFDLEQQSSTITTLEVETKDFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQMKREKERGREVGDGEEKESLPNPLQAAAASALAFSIGAMVPLLAAFFISDYKVRVGAVVAAVSFALVVFGWFGAVLGKAPIFRSILRVLIGGWVAMSITFGLTKLIGTSGL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2214 214 CDD Nodulin-21 37 183 - -
Psa1g2214 214 Pfam VIT family 119 206 IPR008217 GO:0005384|GO:0030026
Psa1g2214 214 Pfam VIT family 39 116 IPR008217 GO:0005384|GO:0030026
Psa1g2214 214 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 6 211 IPR008217 GO:0005384|GO:0030026
Psa1g2214 214 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 6 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2214 Psa-Chr1 168460318 168462130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2214 5 214 Nodulin-like Gene Family AT3G43660 68.095 5.65e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2214 K22736 - gmx:100815165 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g2214 1 168460318 168462130 Psa6g4411 6 388830731 388833294 PCT