Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2212 ATGAAAAAACAAGATCCATCTCAACCTACACATCAAGGTAATGAAAAGAAAAAACATTATAGAGGAGTTAGGCACAGACCATGGGGAAAATGGGCAGCTGAAATAAGAGATCCTAGAAAAGGAGCAAGAGTATGGCTTGGCACATTTGAAACTGCTGAAGCTGCAGCTACTGCTTATGATGAAGCTGCTTTGAAGTTCAAAGGAAACAAAGCCAAGCTTAATTTCCCTCAACTCATTACTCATTCGCCGCAATCGGATCCATCGCCAATACGTAATAACAATAACGTTTCGTCTCAATCTTCATCTCCATCTTTGTCATTGCGGAGTAGTCCACAAAAGTCTCTTTTTCCGTTGTCATCAACAACGGAAAAAGAGATGTTTCCAAACCTTATGCAATATGTGCAAGTGCTCTGTAGTAAGGACGATGAAGATCTTCGACGTGCTATTATATGTCTTTACAATAGTAGTAATAATAATAGTAATAGTAATCATTACGATAATAATAATGAACGATTTCGTTATTATAATTTGCCACCATTCTTCTCATCAATGACACCATCTTCTACTTCTAAAGACGGTGTTGTGTCTAGGATTGGAGATTGTCGTCCTTTAGATACGAGAAGTGGTCTTGATGAAAGGAACACGAGAGGGTCGTAG 657 0.3851 MKKQDPSQPTHQGNEKKKHYRGVRHRPWGKWAAEIRDPRKGARVWLGTFETAEAAATAYDEAALKFKGNKAKLNFPQLITHSPQSDPSPIRNNNNVSSQSSSPSLSLRSSPQKSLFPLSSTTEKEMFPNLMQYVQVLCSKDDEDLRRAIICLYNSSNNNSNSNHYDNNNERFRYYNLPPFFSSMTPSSTSKDGVVSRIGDCRPLDTRSGLDERNTRGS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2212 218 PANTHER DNA-BINDING DOMAIN 3 200 IPR044808 GO:0003700|GO:0009873
Psa1g2212 218 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Psa1g2212 218 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Psa1g2212 218 MobiDBLite consensus disorder prediction 1 16 - -
Psa1g2212 218 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Psa1g2212 218 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Psa1g2212 218 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Psa1g2212 218 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Psa1g2212 218 MobiDBLite consensus disorder prediction 81 114 - -
Psa1g2212 218 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Psa1g2212 218 MobiDBLite consensus disorder prediction 1 34 - -
Psa1g2212 218 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Psa1g2212 218 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 3 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2212 Psa-Chr1 167944964 167946916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2212 4 105 AP2-EREBP Transcription Factor Family AT5G61890 58.475 2.39e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g2212 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2212 - - mtr:MTR_6g033255 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g2212 1 167944964 167946916 Psa1g2212 1 167944964 167946916 ECH