Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2201 ATGGCGAATGCAATACTATTAGCAATTGCTGATGCAGTATTAACATTTATATGGGTTTTCATTTCTTCAACCCTAGGATTAGTCACCACAGAAATTCTGAAAGCTTTTAATCTTGAATTTGTGTCTTACAATGGTGTTAATTACCCTTTTATTATAATCACTACTTTATTAATTTTTGTTATTATATTCACTTTCACTGCTATTGGTAATGCCATGGGTGGTGCCAGTTTCAATCCTACAGGAAATGCTTCTTTCTATGCTGCTGGTCTTGGTTCTGATACCCTTTTCTCTATGGCTCTTCGTTTCCCCGCTCAGGCGTTAGGTGCGGTGGGTGGTGCTATGGCAATTATGGAAGTAATGCCGCCAAAATATAGGCACATGATTGGTGGACCCGTTTTGAAGGTTGATTTGCATACAGGAGCTATTGCAGAAGGAGTGTTGACATTTGTAATCACTTTTGTCGTTCTCTTCATCATAATCAAGGGTCCTCGTAGCGAGTTCCTGAAGACTTTGATGATGTCTATTTCCACCGTGGCTGTGATCGTCGCCGGTTCTGCCTACACCGGACCGTCCATGAATCCTATCCTTGCATATGGTTGGGCATATTTAGACAACTGGCACCACACATGGGATCAATTCTATGTATATTGGATTTGTCCATTCATTGGAGCAATACTTGCTGCTTGGTTGTTTCGTGCTGTCTTCCCTGCTCCACCAAAAGTAGTCAAACAGAAAAAAGCTTGA 744 0.4126 MANAILLAIADAVLTFIWVFISSTLGLVTTEILKAFNLEFVSYNGVNYPFIIITTLLIFVIIFTFTAIGNAMGGASFNPTGNASFYAAGLGSDTLFSMALRFPAQALGAVGGAMAIMEVMPPKYRHMIGGPVLKVDLHTGAIAEGVLTFVITFVVLFIIIKGPRSEFLKTLMMSISTVAVIVAGSAYTGPSMNPILAYGWAYLDNWHHTWDQFYVYWICPFIGAILAAWLFRAVFPAPPKVVKQKKA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2201 247 Pfam Major intrinsic protein 8 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g2201 247 PANTHER AQUAPORIN SIP1-1 4 246 - -
Psa1g2201 247 PANTHER AQUAPORIN SIP1-1 4 246 IPR044222 GO:0015250
Psa1g2201 247 Gene3D Glycerol uptake facilitator protein. 3 245 IPR023271 -
Psa1g2201 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g2201 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g2201 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g2201 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g2201 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g2201 247 SUPERFAMILY Aquaporin-like 6 240 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2201 Psa-Chr1 167126599 167130207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2201 3 246 Major Intrinsic Protein MIP AT5G18290 52.653 3.31e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2201 K09875 - gmx:100788738 347.436