Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2188 ATGTATTACCATCAACATGAAGAAGCAAGAAACATGCATGCTTTAAGGATGCAAATGCAAGAAAGAGGAAATGGAAGCATGGATTCAGGACTTGTTCTCTCAACCGATGCTAAGCCAAGACTAAAATGGACACCAGACCTTCATCAACGTTTCATCGAAGCAGTCAATCAACTTGGAGGAACAGATAAAGCTACACCAAAAACAGTATTGAAACTTATGGGAATTCCTGGACTTACATTATACCATTTAAAGAGTCACCTACAGAAATATAGGATCAGTAAAAGTACAAATGGACACACTAATACTTTCAACAATAAAATTGCAACACCAACCACTGAATTGGAAAGTAGAATGTCTGAATCAAGTGGAATTCATATGAGAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGATATAAATGAAGCATTAAATATGCAAATTGAAGTGCAAAGAAGACTACATGAGCAACTTGAGGTACAACGACACTTGCAACTACGAATAGAGGCTCAAGGAATGTACCTTCATTCGGTGCTTGAAAAAGCTAAGGAAACATTAGGAAAACAAAATTTAGGTACTATGGGACTTGATGATGCAAAGGTTCAACTATCCGAGTTAGCATCAAGAGTATCGACGGAAAGTCTTGATTCTAAGTTTTCAGAAATAAAAGAATTGAATATGAGTTGGCCTCAACAAAAACAAGAAGTTGAAGCCATTGATTATTCAATGGGAAGTTTCTTAACCAATAGTGAGGACTCTCAAAGAGACCAAGAAATGCATAACAAAGACATGAATTTGAGAGCATATAATGACACATTTTGTGAAGAAGTGAAGGAGAATACGAAGTTTTTTTCCTCATCAAACGATAAAGTATTAAAGGAACCGAATGGTGTGTCAGAAAATACCTCTGACCTCTTATCCGTGAATATAGGAAGAATTCATGAAGAAGAATTGTATATGAGGAGAAGTATGTCAAAGGAAAATTTAAAGGGTGAAGAATGGAAAAGAAGAAAAAGTAGTGAAACTAGTGGAATGCAACTTAAACTTAATAGTGAAAAAATTTCTCAAGACTATAGACTAGCAAACTTTGAAGTGAAATTAGACTTGAATTCTCATGATAACAATGATGCCTCTTCTCACTGCCAAAAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1185 0.3502 MYYHQHEEARNMHALRMQMQERGNGSMDSGLVLSTDAKPRLKWTPDLHQRFIEAVNQLGGTDKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKSTNGHTNTFNNKIATPTTELESRMSESSGIHMRDLSIGLQTNKNSDINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGMYLHSVLEKAKETLGKQNLGTMGLDDAKVQLSELASRVSTESLDSKFSEIKELNMSWPQQKQEVEAIDYSMGSFLTNSEDSQRDQEMHNKDMNLRAYNDTFCEEVKENTKFFSSSNDKVLKEPNGVSENTSDLLSVNIGRIHEEELYMRRSMSKENLKGEEWKRRKSSETSGMQLKLNSEKISQDYRLANFEVKLDLNSHDNNDASSHCQKFDLNGFSWNC* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2188 394 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 6 393 - -
Psa1g2188 394 Gene3D - 37 95 - -
Psa1g2188 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 95 IPR017930 -
Psa1g2188 394 Coils Coil 142 162 - -
Psa1g2188 394 Pfam Myb-like DNA-binding domain 40 91 IPR001005 -
Psa1g2188 394 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Psa1g2188 394 Pfam MYB-CC type transfactor, LHEQLE motif 140 185 IPR025756 -
Psa1g2188 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 393 IPR044848 GO:0003700
Psa1g2188 394 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 38 93 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2188 Psa-Chr1 165741187 165744112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2188 70 393 G2-like Transcription Factor Family AT3G04030 45.906 4.63e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa1g2188 Myb_DNA-binding 3.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2188 - - mtr:MTR_6g032990 635.18