Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2171 ATGGATTTCACATCAGCGAAGAACGCATCAGAGAACAACAACAACAACAACAACTCAGAAAACTCTCACCAAATCGCTGATTCTTCTCCTCAATTAGCTTCTGATTCCCACAATATCAAAGAAACCGAAGAGCGACAATCACGTGAACTCAAAGCTGGTCTTCACCCTCTAAAGAGCAAGTTTGTATTTTGGTACACTCGTCGGGTACCTGGGATTCGGAATCAGTCATATGAGGACAACATAAAGAAGATTGTTGAGTTCAGTACGGTTGAAGGATTTTGGGTCTGTTATTGCCATATTTCTCGTCCTGCTTCTTTGCCTAGTCCAACAGATTTGCACCTTTTTAAAGAAGGAATTCGTCCGTTATGGGAGGACTCTGCTAACTGCAATGGTGGAAAATGGATTATACGATTCAAAAAGGCTGTCTCAGGTCGTTTTTGGGAGGACCTGGTGCTTGCTTTAGTGGGTGACCAGTTGGATTATGGTGATAACATATGCGGTGCAGTACTAAGCATTCGATTCAACGAGGATATAGTGAGTGTGTGGAACCGCAATGCTTCTGATAATCAGGCTGTAATGGCTTTGAGAGATTCGATTAAGCGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCACGACGCTTCTCTGCGAGACAATTCATCTTACAGGAATACTTGGTTGAGAGGCTAG 702 0.433 MDFTSAKNASENNNNNNNSENSHQIADSSPQLASDSHNIKETEERQSRELKAGLHPLKSKFVFWYTRRVPGIRNQSYEDNIKKIVEFSTVEGFWVCYCHISRPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKAVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDIVSVWNRNASDNQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2171 233 PANTHER BNAA10G16710D PROTEIN 42 233 - -
Psa1g2171 233 MobiDBLite consensus disorder prediction 1 36 - -
Psa1g2171 233 Pfam Eukaryotic initiation factor 4E 56 213 IPR001040 GO:0003723|GO:0003743|GO:0006413
Psa1g2171 233 Gene3D RNA Cap, Translation Initiation Factor Eif4e 25 226 IPR023398 -
Psa1g2171 233 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 42 233 IPR001040 GO:0003723|GO:0003743|GO:0006413
Psa1g2171 233 MobiDBLite consensus disorder prediction 1 49 - -
Psa1g2171 233 ProSitePatterns Eukaryotic initiation factor 4E signature. 111 134 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Psa1g2171 233 SUPERFAMILY eIF4e-like 47 229 IPR023398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2171 Psa-Chr1 162492901 162496733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2171 1 233 Eukaryotic Initiation Factors Gene Family AT5G18110 72.103 6.99e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2171 K03259 - gmx:100499744 410.994