Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2169 ATGGAGATTCAATTTGAGGAACAAAAGAAGAGTTTGAGACCAAAAAGGAGCAACAAATTATTCAAAGGTGGAAACAAAAAGAGTGAAACAAAAAACAAGTTTGTTGGGGTGAGACAAAGACCATCAGGGAGATATGTTGCTGAGATTAAGGACACGACACAAAACATAAGAATGTGGCTTGGAACATTTGAGACAGCCGAGGAAGCCGCGAAAGCTTACGACGAAGCCGCGACACTTCTTCGTGGCTCCAACACTCGCACCAACTTCGTCACACATGTTTCCTATGATTCTCCTCTCGCTTCTCGAATTCAAAATCTTCTTAACAATCGAGAAAATCGAGAAAAGGGTTCTAGAAAACAAGTAGAAGAAGATATGGAGGTCAGAAGCAACACCACGGTTAACAATCAAGAAAATGGTTCTAGAAAACAAGTAGAAGAAAATATGGAGGTCAGAAGCAACACCACGAACCGTGATACCACAACTAATGATAATACCAATAATATCAATGTTAGTAGCACCACTAACGGTACTACTAATATTATTAGTGTCAGTAACGCGACTAGCAATAGTAATACTATTAGTAGCACCATTAACACTATTCACATGATTAGTGGTACTATTGATAGTAGTAGTGGTGCTAGCAGTGTGACTACTTCGAGCAAAAACAACATTAGTGAAAATATTGAAAACTCGATTTCTAGCGTAGCAACAATGCAAAACACAAGATTATTCGATGATGCATATAGGCCGGATATGAGAAATTTCTACGAGTATGAGTCAAGTTACAATAAGTCCAATGTTTCATGGGATTTTGGACCTATTTTTGATAACTTTCCTTTTGGTCAAGGGTTGGACATGATTGATGAATTAGGGGTTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCATGAGTACATGGAGAATTTTCAAGATTGCAATGAAGCTCTATGGAATCTTTCACCCTTTTGCTCATTTTTATGTTCAAACAATATGCATCAAGTCTAA 1041 0.3737 MEIQFEEQKKSLRPKRSNKLFKGGNKKSETKNKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAAKAYDEAATLLRGSNTRTNFVTHVSYDSPLASRIQNLLNNRENREKGSRKQVEEDMEVRSNTTVNNQENGSRKQVEENMEVRSNTTNRDTTTNDNTNNINVSSTTNGTTNIISVSNATSNSNTISSTINTIHMISGTIDSSSGASSVTTSSKNNISENIENSISSVATMQNTRLFDDAYRPDMRNFYEYESSYNKSNVSWDFGPIFDNFPFGQGLDMIDELGVSEFERMKVERQISASLYAINGVHEYMENFQDCNEALWNLSPFCSFLCSNNMHQV* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2169 346 MobiDBLite consensus disorder prediction 111 168 - -
Psa1g2169 346 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 326 - -
Psa1g2169 346 SMART rav1_2 33 97 IPR001471 GO:0003700|GO:0006355
Psa1g2169 346 Gene3D AP2/ERF domain 32 92 IPR036955 GO:0003700|GO:0006355
Psa1g2169 346 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 9 326 - -
Psa1g2169 346 MobiDBLite consensus disorder prediction 153 168 - -
Psa1g2169 346 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Psa1g2169 346 MobiDBLite consensus disorder prediction 127 141 - -
Psa1g2169 346 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Psa1g2169 346 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Psa1g2169 346 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Psa1g2169 346 MobiDBLite consensus disorder prediction 1 31 - -
Psa1g2169 346 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Psa1g2169 346 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Psa1g2169 346 MobiDBLite consensus disorder prediction 111 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2169 Psa-Chr1 162460351 162461391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2169 14 108 AP2-EREBP Transcription Factor Family AT5G19790 68.421 2.63e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g2169 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2169 K09286 - gmx:100792432 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2065 3 182616344 182617186 Psa1g2169 1 162460351 162461391 PCT