Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2167 ATGAACGATCTTCTTACGGAGTCGTTTGATATCCCCCGTGGCCAAGGTCGTGGAGGTGGCGACGTTGAGTTGGGAGACTATGCAAGGAATTCAGGAGAGCTTGGCTTGGAAAACTTCTTCAAAAAGGTTCAAGAACTTGATAAACAATATGCTAAGCTGGATAACCTTTTAAGAAAGCTCCAGGACGCCCATGAAGAGTCCAAAGGTGTTAGCAAAGCTCCTGCTATGAAGGCGATAAAGCAGAGGATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTACTTAAAGACCAAGGTTGAAGAGCTGGACAAAGAAAACTTAGCTAATAGGCAGAAGCCTGGTTGTGGAAAAGGATCAGCTGTTGACAGGTCAAGAACAGCAACGACAGTTTCCATGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGATCCTAAGAGAATCCATCCATGAAGAATATCGCGAGGTTGTTGAGAGACGCGTATTTACAGTAACGGGCAAACAAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAGAAAGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACCCTGGCTGAAATTCATGAACGGCACGAAGCAGTCAGAGATGTTGAGAGGAAACTGCTTGATTTGCAGCAGATATTTATGGATATTGCAGTGTTAGTTGATGCACAAGGAGACATGCTTGACAACATAGAATCACAGGTTTCAAGTGCAGTAGATCATGTGCAACAAGGAAATAATACCCTCCAAAAGGCAAAGAAACTGCAAAAAAACTCAAGAAAATGGATGTGTATTGCCATCATGATACTTCTCATTTTTGTTATAATCATTGTTGTTTCTGTCATCAAACCATGGGTCACCAAACAAGGTGCATAG 924 0.4188 MNDLLTESFDIPRGQGRGGGDVELGDYARNSGELGLENFFKKVQELDKQYAKLDNLLRKLQDAHEESKGVSKAPAMKAIKQRMEKDVDEVKKTAHYLKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTVSMKKKLKDKMAEFQILRESIHEEYREVVERRVFTVTGKQADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIHERHEAVRDVERKLLDLQQIFMDIAVLVDAQGDMLDNIESQVSSAVDHVQQGNNTLQKAKKLQKNSRKWMCIAIMILLIFVIIIVVSVIKPWVTKQGA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2167 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa1g2167 307 PANTHER SYNTAXIN 3 299 IPR045242 -
Psa1g2167 307 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Psa1g2167 307 SMART tSNARE_6 201 268 IPR000727 -
Psa1g2167 307 Coils Coil 36 66 - -
Psa1g2167 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Psa1g2167 307 Coils Coil 135 155 - -
Psa1g2167 307 Pfam SNARE domain 242 294 IPR000727 -
Psa1g2167 307 Coils Coil 87 107 - -
Psa1g2167 307 CDD SynN 36 193 IPR006011 GO:0016020
Psa1g2167 307 Gene3D - 33 160 - -
Psa1g2167 307 Gene3D - 197 299 - -
Psa1g2167 307 MobiDBLite consensus disorder prediction 1 22 - -
Psa1g2167 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Psa1g2167 307 CDD SNARE_syntaxin1-like 205 267 - -
Psa1g2167 307 PANTHER - 3 299 - -
Psa1g2167 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2167 Psa-Chr1 162447234 162452596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2167 1 307 SNARE and Associated Proteins AT3G03800 71.010 3.52e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2167 K08486 - gmx:100306329 520.776