Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2111 ATGTCTTTGGTAGCAAACGAAGAGTTCCAACACATTCTTCGTGTGTTGAACACCAACGTTGATGGGAAACAGAAGATTATGTTTGCTCTTACCTCAATCAAAGGTATTGGGAGAAGATTCGCTAACATCTGTTGCAAAAAAGCTGATGTCGACATGAACAAGAGGGCTGGTGAATTGAGTGCTGCTGAGTTGGAGAATGTTATGACTGTGGTTGCGAACCCTAGGCAATTTAAGATCCCTGATTGGTTTTTGAATAGGAAGAAGGATTATAAGGATGGTAAGTTTTCTCAGGTTGTGTCAAATGGTCTGGACATGAAATTGAGGGATGATTTGGAGCGTTTGAAGAAAATCAGGTGA 357 0.409 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELSAAELENVMTVVANPRQFKIPDWFLNRKKDYKDGKFSQVVSNGLDMKLRDDLERLKKIR* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2111 118 Gene3D - 1 80 - -
Psa1g2111 118 ProSiteProfiles Ribosomal protein S13 family profile. 15 118 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa1g2111 118 Pfam Ribosomal protein S13/S18 14 118 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa1g2111 118 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 118 - -
Psa1g2111 118 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 4 118 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa1g2111 118 SUPERFAMILY S13-like H2TH domain 13 118 IPR010979 GO:0003676
Psa1g2111 118 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 1 118 - -
Psa1g2111 118 Gene3D 30s ribosomal protein s13, domain 2 92 118 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2111 Psa-Chr1 155608430 155609933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2111 1 118 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 92.373 1.15e-79 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2111 K02964 - gmx:100306474 228.024