Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2094 ATGGACTGTGATAGATCTAATATCACAGTTTTGATTGTGGATAATGATGATTTTTCATTGGAATATCTTGCTAATATACTCATGGCATTGCAATATCGAGTTCAAAGTGCCAAGACTGCTCATCAAGCTTTGGTGACTCTCCAAGACCCTGAAGGCTGGTTTGATCTTATAATTACAGAGTTATCAATCTTAGGAATGAATTATGGCTTTGATTTTTTGAAGCTTATTAAAAATCAATTCCATATACCTGTAATAATGATGTCCAAAGAAAACAATGTGAGTTTAATCTCCAAGGCTCTAGAAAATGGAGCTGCACAATATATTGCAAAACCCTTTTCTGCAGAAGATTTCAAAGATATTTGGAAACATGTTTTGGATGCAAAAAAAGAGAAACTTTTTGTTGAAAGTTTATTTGTAAAAAATGAAGAGCAAGAGACACTGAGTCATGAAACTAAGACAAAAAAGAAAGCTTGCAAGAGAAAGTGTAGTGATGAATATCAAGAAAAAGAAGAATCTCAAGTCGTTAAGAAACCAAAACTTGTTTGGACAACTTATCTCCACAATCTTTTTCTACATGCCATTAAGCAAATTGGATTGGAAAAGGCTGTACCAAAGAAAATTTTGGATATGATGAATATTCCAAACTTAACTAGAGAAAATGTTGCAAGCCACCTACAGAAGTATCGCATATTTCTACGCGATGTTGCCGAGAAAGGAATGGTTGGAGGCATAACTCATAGAGCTCTAAGGTCAAGATTTGCATCAAGTCTACCAGTGTCACTGGTCAAAGAATTTCAAACCATAAGGACAAATAAACTTCGTACACCGACACCTGAATATTTGCAAACATTACCGTATCGACCAAGAGATAAAAACATTGCTCTTAACCCTTACAACCAATTTCCAACACATCGTGTTGACCAGTTTCCTTATGTACAAAAAGGGTTAACTTTTCAAGATTCGAACAAGGTTAGATTTGGAAAATCAGAACTAAAAACCGATTTCGTGGACAATAATGTTCATGATCAAAACATGTTTGGAGTAAACTCCTCAGGCCTTTCATTGTTTCAAACAAAAAACTTATTCGATGATGGTGCTTCAACTAGTTTCTCATCACATGGAAGTGGACAAGGATTTAGGCCTTATTCTTCATCTTTCATAACAAGGGATTCCAAATTTGGTGACATTTGTTACCAAAATCATGGTTCTATGGGAAATGAATCTTTTAATCATATCAATCATGGTGTGAAAAATCAGAACTTGGGATCTTTGAGAAGTTCTAATATTTTGCCTCAAAATGTTGCTTCTGATGCAAGAAACGACAAAATCCCTTTTGGAATTCAAATCAACAATGAATTAGGAACGGTTGGAATTGGAACTATGAATATAAGAAGGTTTAATAGTGTTGGAAAAAGGGCTCAAACTACGAATAACAATAGTTTTGGTTTGAATACTAAGGATCAAAATGAAAATATGAATGAAAATATTGTGCAAGACGACGGTCATACTTTCACGAACAATTCTGAATTCAAACGAATGGAGTTTAACATTTCTGATTCCTTAATTACTAATGACAAAAATCTTCTTAATCAGCCATATAAAAGTGGTGATGATATCTCTCCTCCAGCTGAAACCACATCTTGTGTGTTGAATGAGTCATCAACAAATTCAGATCAAAATTCTAATAAGTTGCAAGTACATGAAGGATTTTCAAATGGAGAACCATATGATAGATTCATGGAAGAAAATGTGTCTAAAACAAGTACCTCGACTATTGATCCAGAACTGAATATGGATCTTATTGAAACTTTGTTTGGTACCATAGAAAACTAG 1833 0.3399 MDCDRSNITVLIVDNDDFSLEYLANILMALQYRVQSAKTAHQALVTLQDPEGWFDLIITELSILGMNYGFDFLKLIKNQFHIPVIMMSKENNVSLISKALENGAAQYIAKPFSAEDFKDIWKHVLDAKKEKLFVESLFVKNEEQETLSHETKTKKKACKRKCSDEYQEKEESQVVKKPKLVWTTYLHNLFLHAIKQIGLEKAVPKKILDMMNIPNLTRENVASHLQKYRIFLRDVAEKGMVGGITHRALRSRFASSLPVSLVKEFQTIRTNKLRTPTPEYLQTLPYRPRDKNIALNPYNQFPTHRVDQFPYVQKGLTFQDSNKVRFGKSELKTDFVDNNVHDQNMFGVNSSGLSLFQTKNLFDDGASTSFSSHGSGQGFRPYSSSFITRDSKFGDICYQNHGSMGNESFNHINHGVKNQNLGSLRSSNILPQNVASDARNDKIPFGIQINNELGTVGIGTMNIRRFNSVGKRAQTTNNNSFGLNTKDQNENMNENIVQDDGHTFTNNSEFKRMEFNISDSLITNDKNLLNQPYKSGDDISPPAETTSCVLNESSTNSDQNSNKLQVHEGFSNGEPYDRFMEENVSKTSTSTIDPELNMDLIETLFGTIEN* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2094 610 ProSiteProfiles Response regulatory domain profile. 9 125 IPR001789 GO:0000160
Psa1g2094 610 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 177 230 IPR006447 GO:0003677
Psa1g2094 610 PANTHER RESPONSE REGULATOR 23-RELATED 7 544 - -
Psa1g2094 610 Pfam Response regulator receiver domain 10 119 IPR001789 GO:0000160
Psa1g2094 610 SMART REC_2 8 121 IPR001789 GO:0000160
Psa1g2094 610 SUPERFAMILY CheY-like 6 128 IPR011006 -
Psa1g2094 610 CDD REC_typeB_ARR-like 10 125 - -
Psa1g2094 610 Pfam Myb-like DNA-binding domain 181 229 IPR001005 -
Psa1g2094 610 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 544 IPR045279 GO:0009736
Psa1g2094 610 SUPERFAMILY Homeodomain-like 175 234 IPR009057 -
Psa1g2094 610 Gene3D - 6 146 - -
Psa1g2094 610 Gene3D - 174 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2094 Psa-Chr1 154192140 154197748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2094 8 240 Response Regulator Gene Family AT4G31920 36.910 2.34e-42 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa1g2094 Response_reg 2e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2094 - K14491 mtr:MTR_7g026400 551.977