Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2080 ATGGAAGAACTACCTATTGATTTACCTCCTGGTTTTAGATTCCACCCTAATGATGATGAAATAATCACTTCTTATTTGATCAACAAAGTTTTGAATATAAACTTTAGTGCAATTGCAATTGGGGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTACCTAAGAAAGCAAAGATGGGAGAGAAAGATTGGTATTTCTTTAGTGAAAGAGATAGAAAGTATCCAACAGGGAGAAGAACAAATAGAGCAACTGAGTTAGGTTATTGGAAAGCTACTGGAAAAGATAAAGAAATCTATAAAGGGAAAAGTAAACAACTTGTTGGAATGAAGAAAACTCTTGTGTTCTATAAAGGTAGAGCTCCAAAGGGAGTGAAAACTAATTGGGTTATGCATGAGTTTAGATTGGATGGAAAATTAGCAACTTGTAATCTTCCTAAGGATGCTAAGGATGAATGGGTTGTGTCAAGAATCTTCAACAAGAACAACAATGAAGTTAAAAAAACATCATCAATTTCCAATCTTTTAAGGATTAACTCAATAGGTGATGATTTATTGGATTTTTCCTCACTTCCATCTCTCATGGACGATACTCCTTTTGAAATGAACAACACCATTGATCATGATCATGATCATCATCATCATCATCATGATTTCAAAGAAACCAATTCTTCAACAAATGGTTACTATTTTCCAAGCTACTTAATCAACAATGAAATCAATCTCACAAACCAAGAGAATTTGAATATTCCAAAAACACCCTTGAAACATAACATGTTATCGAATGATTCTTATATGAATCATCAATGGAACAAAGAGTGCAAGATGGAACTATTGTCTACCAACAATTCTTTGTTAAGTGTTTCACAAGACACATGTTTGAGTAATGAAATGAATAATGACATATCTTCTGTGGTCTCAAAGCAAGAAACTATGGGAAGGAATGAAACTTTGTATGAAGATTTTGAATATTTGATGAATGGCTATTGA 987 0.3293 MEELPIDLPPGFRFHPNDDEIITSYLINKVLNINFSAIAIGEVDLNKCEPWDLPKKAKMGEKDWYFFSERDRKYPTGRRTNRATELGYWKATGKDKEIYKGKSKQLVGMKKTLVFYKGRAPKGVKTNWVMHEFRLDGKLATCNLPKDAKDEWVVSRIFNKNNNEVKKTSSISNLLRINSIGDDLLDFSSLPSLMDDTPFEMNNTIDHDHDHHHHHHDFKETNSSTNGYYFPSYLINNEINLTNQENLNIPKTPLKHNMLSNDSYMNHQWNKECKMELLSTNNSLLSVSQDTCLSNEMNNDISSVVSKQETMGRNETLYEDFEYLMNGY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2080 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 303 - -
Psa1g2080 328 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Psa1g2080 328 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Psa1g2080 328 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 5 303 - -
Psa1g2080 328 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Psa1g2080 328 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2080 Psa-Chr1 151728432 151730543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2080 2 305 NAC Transcription Factor Family AT5G18270 52.581 1.40e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g2080 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2080 - - cam:101514407 432.565