Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa1g2069 | ATGGATAGACTCATAAGGTTAGATCCATCTAACATAGTACTAATAAGAGTTGAACAAGGACAAAAATGTCTAGGAAAAATAACCTTAAACAATGTCATGTACACTATGCCTGTTGCTTTTAGGATTCAACCACTCATCAAAACTAGGTACACAATCAAACCTCAATCAGGGATCATTTCTCCATTAGCATCACTTGTGATAGAGATAACATATCATCCTCCACAGCAACAAGGTTCAAATAATCTTCCTCACTCTTTTCCTTTTTCAGATGATTCATTTCTTCTACATAGTGTTCTTGCTCCTGGTGCAGCCATCAAAGAGCCTTCATCCATGTTTGATTCTGTCCCAAGTGATTGGTTCACCACTAAAAGAAAACAAGTTTTCATTGATAGTGCAATCAAAGTCATGTTTGTAGGGTCACAAATCTTGACTCAGCTTGTTGAAGATGGTAACTCAATGGATGATATAAGAGAAGTGCTTGAAAAAAGTGATCCTTTATGGGAATCTGTCAACTCTAAAGACTCAAAGGGACAAACTTTGCTTCATTTGGCTATTTCGAAAACAAGACCTGATCTTGTTCAATTGATCCTCGAATTCAAGCCTGATATTGAAGCTACAAATATCGTTGGATCGACTCCGCTCGAGGCCGCGTCTTCCTCGGGCGAATCGTTGATTGTTGAGCTTCTTTTAGCTCATAAGGCCAACACAGAAGGATCAGAATCTTCGATTTTTCGACCAATTCATCACGCGTCGAGAGAAGGACACATGGAGATTCTTAGGCTTCTTTTGCTCAAAGGTGCAAAAGTTGATTCATTGACAAAAGATGGTAACACTTCTTTACACTTAGCTGTTGAAGAAAAAAGAAGAGATTGTGCTAGGCTTTTGTTGGCAAACGGAGCGCGAACCGATGTTCGGAACACAAGAGAAGGTGATACACCTTTACACATAGCAGCAGCCAATGGAGATGAGAACATGGTGAAGCTTTTATTGCATAAAGGAGCTACAAAATATGTGAGAAACAAACTAGGGAAAACAGCGTTCGATGTTGCGGCCGAAAACGGTCACTCGCGCCTCTTCGACGCGCTTCGTTTAGGGGACAGTTTATGCGCGGCAGCACGAAAAGGTGAGGTGAGGACAATCCAAAAGGTTTTGGAAAGTGGTGGAGTGATCAATGGAAGAGATCAAAATGGATGGACATCACTTCATAGGGCTTCATTCAAAGGAAGAATAGATGCTGTTAGGTTTCTTGTGGAGAAAGGTATTGATTTGGATGCAAAAGATGAAGATGGTTATACAGCTTTGCATTGTGCTGCTGAATCAGGACATGCTGATGTGACTGAGTTCTTGGTTAAGAAAGGTGCTGATGTTGAAGCAAGGACTAATAAAGGTGTTAGTGCTTTGCAAATTGTTGAGTCATTGAACTATGTAGGGATTACAAGGATACTTGTTAATGGAGGTGCTAGTAGGGAAGGTTTAGGTGAAAAATTCCCATCTGCACCTTCTAAGATTCCTTTTGGAAGTAAAGTTGAAGGTGGAAGTTTGATGACGATGAAGAAGAAGATGAATAGTCGAACTCGAGCGCTAAGAGGTAGCTTCGATCGTTCGATGCCTTTGGTTGTTCTCTAG | 1626 | 0.4077 | MDRLIRLDPSNIVLIRVEQGQKCLGKITLNNVMYTMPVAFRIQPLIKTRYTIKPQSGIISPLASLVIEITYHPPQQQGSNNLPHSFPFSDDSFLLHSVLAPGAAIKEPSSMFDSVPSDWFTTKRKQVFIDSAIKVMFVGSQILTQLVEDGNSMDDIREVLEKSDPLWESVNSKDSKGQTLLHLAISKTRPDLVQLILEFKPDIEATNIVGSTPLEAASSSGESLIVELLLAHKANTEGSESSIFRPIHHASREGHMEILRLLLLKGAKVDSLTKDGNTSLHLAVEEKRRDCARLLLANGARTDVRNTREGDTPLHIAAANGDENMVKLLLHKGATKYVRNKLGKTAFDVAAENGHSRLFDALRLGDSLCAAARKGEVRTIQKVLESGGVINGRDQNGWTSLHRASFKGRIDAVRFLVEKGIDLDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTNKGVSALQIVESLNYVGITRILVNGGASREGLGEKFPSAPSKIPFGSKVEGGSLMTMKKKMNSRTRALRGSFDRSMPLVVL* | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 396 | 428 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 396 | 428 | - | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 138 | IPR000535 | - | |
| Psa1g2069 | 541 | Gene3D | - | 241 | 313 | IPR036770 | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 176 | 207 | - | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 246 | 274 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | Gene3D | - | 362 | 494 | IPR036770 | - | |
| Psa1g2069 | 541 | SUPERFAMILY | PapD-like | 2 | 151 | IPR008962 | - | |
| Psa1g2069 | 541 | Pfam | MSP (Major sperm protein) domain | 5 | 111 | IPR000535 | - | |
| Psa1g2069 | 541 | PANTHER | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED | 1 | 541 | - | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 246 | 270 | - | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 429 | 461 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SUPERFAMILY | Ankyrin repeat | 169 | 490 | IPR036770 | - | |
| Psa1g2069 | 541 | Pfam | Ankyrin repeat | 310 | 334 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 209 | 241 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 275 | 307 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | Gene3D | Immunoglobulins | 1 | 128 | IPR013783 | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 309 | 341 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 275 | 306 | - | - | |
| Psa1g2069 | 541 | Gene3D | - | 314 | 361 | IPR036770 | - | |
| Psa1g2069 | 541 | Pfam | Ankyrin repeats (many copies) | 398 | 450 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 309 | 334 | - | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 429 | 461 | - | - | |
| Psa1g2069 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 176 | 208 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | PANTHER | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 541 | - | - | |
| Psa1g2069 | 541 | Gene3D | - | 131 | 240 | IPR036770 | - | |
| Psa1g2069 | 541 | PRINTS | Ankyrin repeat signature | 310 | 325 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | PRINTS | Ankyrin repeat signature | 445 | 459 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | Pfam | Ankyrin repeats (3 copies) | 246 | 305 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | Pfam | Ankyrin repeats (3 copies) | 159 | 235 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 342 | 371 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 396 | 425 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 242 | 271 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 309 | 338 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 176 | 205 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 429 | 458 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 209 | 238 | IPR002110 | GO:0005515 | |
| Psa1g2069 | 541 | SMART | ANK_2a | 275 | 304 | IPR002110 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa1g2069 | 367 | 486 | Ion Channels | AT4G32500 | 31.667 | 2.62e-07 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa1g2069 | - | - | gmx:100782444 | 765.377 |