Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2054 GCTTATGGAGAAGAACCAAGTTTCAATGATCTAAATTTCTCTCATCTATTGCATGCTTTTAGCTCACCAATGGAAAATAAGCATTATTCAAAAGTGCTTCTAGTTTTAGTTACAATTTTTGTTTCAACTTCTTACACAAACCAACTTCATCTTCAATCCTCACATACTCACACTCTTCTAAGACTCAAACGCCTATTAAACTTCCCTTCAATTTTAAGCACATGGAATTCAAACACAGATTTTTGTAACACAGATTCAAAAGCTTCTCTAACTGTTGTATGCTATGAAGAAACCATAACTCAGCTTCACATAGTCGGCGAAACAACAACAAAACTTCTTCCAAAAAACTTCTCACTAGATTCATTTTTCGCAACACTATCGCGAATTCCGTCTCTAAAAGTCCTCACACTAGTTTCCTTAGGGTTATGGGGTCCGCTTCCCGGAAAAATCGCGAGTTTATCATCTTTGGAGATTGTTAACATGAGTTCAAATTTTCTATACGGAACTATCCCTCAAGAGCTTCCATTGCTTTCGAATCTTCAAGCACTCGTTCTCGATAACAACATGTTCGATGGACATTTGCCCGATTGGTTGGATTCGTTTCCGTCGTTAACCGTTTTGAATTTGAAACAAAACTTATTCAACGGTTCGCTTCCTGATTCGTTGAGTAGCTTGACGAATATGCGAGTTCTTTCGCTTTCTGGTAACCGTTTCAACGGATCCGTACCGGATTTAAGCCGGTTGGTTAATCTTCAAGTATTGGAGTTGGATGATAATGGTTTTGGACCTAACTTTCCTAGAGTTTGTAACAAGTTGGTTACTTGTGTTCTAAGAAACAACAAGTTTAGGTCTAGTTTACCTGATAACATGAGTTCGTATTATCAACTCGAGAGATTCGACATCTCGGGAAACGCGTTTGTTGGACCGATTCAGTTGGAATTGTTTTCGCTTCCTTTGATTACATATCTCAACATTTCGAGAAACAAATTGTCCGGAATGCTTTTTGAGAATCTGTCATGTAATTCGGTTCTAGAAGAAGTTGATCTGTCTTCGAATCTCTTGAGTGGAAAATTACCAAAATGTTTAGTATCGAATTCCAATGATAGGAATTTCTTGTATGGTGGAAATTGTTTAGAGGAAACAAATCAAAATCAAAATCAACATGAACAATCTTTCTGTCACACTGAAGCTATAGCAGTTGGAATAGTTCCTAATGAGAGAAAGAAACATAAAAGAGTTTCTAAAACAGTTCTTTCTTTCGGGATAGTTGGTGGAATTTTCGGAGGATTTGCACTCGTTGCATTGATTTTTAGTATCATTAGACGAAAAAACGGTAAAAACATGATGATGATGATGAAGAATTCTCAAACAAAATTGATATCAGAAAATGCAGCTTCTGGATACACTTCTAAGTTAATCACTGATGCAGGGTATGTATCTAAAACAATGAACTTTGGAAGTGTTGGTCTTCCACCTTATAGAGCTTTTTCCCTAGAAGAGATTATGGCAGCTACTAACAACTTTGATGCTACTTCTTTCATGGGTGCTGAAGGTTCTCAAGGACAGATGAATAGAGGCCAACTAAAAGAAGGTTCACTAGTTGCTATTAGAAGTGTAAAATTGACCAAAAGCTACAAGACTAAAGATTTCATGCAGCACATAGAAATGATATCGAAATTCCGGCATCAACATTTAGTTAGTGTTCTTGGACATTGCTTTGAACATTACTTAGACGATTCAAATGTCAGACGCATATTTATCGTCTTTGAGTATGTACCAAATGGATCACTCAAGAGCTGGATCTCAGATAGGCATTATAGGAAGTCGCTTACTTGGACTCAACGCGTCGCTGCTGCAACGGGAGTAGCGAAAGGGATTCAATTTTTGCATACGGAGATTGTTCCTGGCGTATACTCGAACAATCTCAAAATCACAGATGTTTTATTGGATCAGAACTTTGTCGCCAAAATCAGTAGTTATAACATGCCATTGTTATCGAAAAGTCCTAGCTTTAGCAAAAGTGTAAAAAGTGAAGATAAGTCTGATATATATGACTTTGGTGTGATACTAATGGAACTCATTCTAGGAAGGACTATAAAGTCGAGAAATGTCGAAACTTTGAAGGAATTGTTGCAAGCAAGTATAATATCAGATGATGAAGCTAGAAGAAGCATTATAGATTCGTCGATTCGTAACGCGTGTTTGGATCAATCATTGAAGACAGTGATGGAGATTTGTAGTCATGATGGTGGTTCCGGAACTAGGCGTAGTAAAGGCGCCAATGCTGCAAAGCGAGCCACTGCAGGAGCAACAACGCAAGATGTATCGGTTGTAGCGCCTTGTGGGGCGTGTAAGTTCTTGAGAAGGAAGTGTAGTGGTGGATGCATTTTTGCACCTTACTTTGGTACAGATCAAGGTGCAGCTAGGTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCGAAGCTTTTGGCCAATATTCCGACTGAACACCGCCAAGAAGCAGCGGCGACTATATCCTATGAGGCTCAGGCTAGGCTATCGGATCCGGTTTATGGTTGTGTGTCCACTATTCTTGCTTTGCAGCAACAGGTGGCAGCAATGCAAGCAGAGGTTTCTATGATGCAATCTCAACTGATGAATAGCAGATACGCATATGCAAGTACTCTTCAAACCACACACCAGCAGCAGCATCAAATACTACAGCAACCAACCTTCAATGTATCTGTGCAACCAGCATATTCCAACAACTCATCTGCTTCGACCAACAACCTCGTGAACATGAACAATTTCAACCATGGTTTTGATCTCACAATGGAGACAGCACCTTCATCTCAGAGCTTAGAGCCTTTTCATAACTCAAGGTTGTCCCATTATGAGGATGATGATTAA 2898 0.393 AYGEEPSFNDLNFSHLLHAFSSPMENKHYSKVLLVLVTIFVSTSYTNQLHLQSSHTHTLLRLKRLLNFPSILSTWNSNTDFCNTDSKASLTVVCYEETITQLHIVGETTTKLLPKNFSLDSFFATLSRIPSLKVLTLVSLGLWGPLPGKIASLSSLEIVNMSSNFLYGTIPQELPLLSNLQALVLDNNMFDGHLPDWLDSFPSLTVLNLKQNLFNGSLPDSLSSLTNMRVLSLSGNRFNGSVPDLSRLVNLQVLELDDNGFGPNFPRVCNKLVTCVLRNNKFRSSLPDNMSSYYQLERFDISGNAFVGPIQLELFSLPLITYLNISRNKLSGMLFENLSCNSVLEEVDLSSNLLSGKLPKCLVSNSNDRNFLYGGNCLEETNQNQNQHEQSFCHTEAIAVGIVPNERKKHKRVSKTVLSFGIVGGIFGGFALVALIFSIIRRKNGKNMMMMMKNSQTKLISENAASGYTSKLITDAGYVSKTMNFGSVGLPPYRAFSLEEIMAATNNFDATSFMGAEGSQGQMNRGQLKEGSLVAIRSVKLTKSYKTKDFMQHIEMISKFRHQHLVSVLGHCFEHYLDDSNVRRIFIVFEYVPNGSLKSWISDRHYRKSLTWTQRVAAATGVAKGIQFLHTEIVPGVYSNNLKITDVLLDQNFVAKISSYNMPLLSKSPSFSKSVKSEDKSDIYDFGVILMELILGRTIKSRNVETLKELLQASIISDDEARRSIIDSSIRNACLDQSLKTVMEICSHDGGSGTRRSKGANAAKRATAGATTQDVSVVAPCGACKFLRRKCSGGCIFAPYFGTDQGAARFAAVHKVFGASNVSKLLANIPTEHRQEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSMMQSQLMNSRYAYASTLQTTHQQQHQILQQPTFNVSVQPAYSNNSSASTNNLVNMNNFNHGFDLTMETAPSSQSLEPFHNSRLSHYEDDD* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2054 965 Pfam Leucine rich repeat 178 238 IPR001611 GO:0005515
Psa1g2054 965 Gene3D Ribonuclease Inhibitor 52 269 IPR032675 -
Psa1g2054 965 ProSiteProfiles Protein kinase domain profile. 509 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g2054 965 SUPERFAMILY Protein kinase-like (PK-like) 487 713 IPR011009 -
Psa1g2054 965 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 30 747 - -
Psa1g2054 965 Pfam Lateral organ boundaries (LOB) domain 780 878 IPR004883 -
Psa1g2054 965 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 30 747 - -
Psa1g2054 965 Gene3D Transferase(Phosphotransferase) domain 1 592 750 - -
Psa1g2054 965 Gene3D Ribonuclease Inhibitor 270 399 IPR032675 -
Psa1g2054 965 Pfam Protein tyrosine and serine/threonine kinase 517 695 IPR001245 GO:0004672|GO:0006468
Psa1g2054 965 SUPERFAMILY L domain-like 56 379 - -
Psa1g2054 965 Gene3D Phosphorylase Kinase; domain 1 488 591 - -
Psa1g2054 965 Coils Coil 860 880 - -
Psa1g2054 965 MobiDBLite consensus disorder prediction 944 965 - -
Psa1g2054 965 ProSiteProfiles LOB domain profile. 779 881 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2054 Psa-Chr1 149298290 149303557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2054 68 746 Miscellaneous Gene Families AT3G03770 58.357 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Psa1g2054 PK_Tyr_Ser-Thr 8.6e-17 CL0016
TF LOB Psa1g2054 PK_Tyr_Ser-Thr 8.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2054 - - gmx:100813207 1006.51