Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2053 ATGATCATTCCGAACAATGTCATTAGCTACGAAAACGAAGATAGAGAAACAGAAATGAAGATTTCAAAGAAGACGAGTAATCGAAACTCAGAAGAATCATTACTAGTTCAAAACGCAGACCTAATCCTCCCATGGCTAACCCATCAACAACTCGCCAATCTTTCCTTAACCTCCAAATCACTCCACAAACTCACTCAAACCCTAACCCTAAATCGTATCTCCGATGCTTCTAGAAACTTCGAGAATTTCCCAATCCCATTCCTCAACAACAACGATCACAATCATCCATATTCATACTTTCTCTACACACCTTCACTTCTCTCCACCACTAACATCCCTCGTTACCAACCATGGGGCGGCAATTCTGTTATTCCTAAAGGACACTTCTTGTTTCATTATGCAGGTGAACTATTGACAACCAAGGAAGCACAAAGGAGACAACAATATTACGATGAATTGTCATCGCGTGGTCGTTTCTTTTCTGCACTTTTAGTTGTAAGGGAACACTTGCCATCTGGAAATGCATGTTTGAGATTGAACATAGACGCCACAAGAATAGGAAACGTTGCACGGTTTGTAAATCATTCATGTGATGGCGGTAATTTAAGCACAAAGCTAATTAGAAGTACAGGAGCTTTGTTCCCACGCCTTTGCTTCTTTGCTTTGAAAGATATCCAAAAAGATGAAGAACTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCCAACGGATTACCGTGTTACTGCAACAGCCCTTCTTGCCTTGGAACATTGCCGTCAGAAGACACTTGA 792 0.4078 MIIPNNVISYENEDRETEMKISKKTSNRNSEESLLVQNADLILPWLTHQQLANLSLTSKSLHKLTQTLTLNRISDASRNFENFPIPFLNNNDHNHPYSYFLYTPSLLSTTNIPRYQPWGGNSVIPKGHFLFHYAGELLTTKEAQRRQQYYDELSSRGRFFSALLVVREHLPSGNACLRLNIDATRIGNVARFVNHSCDGGNLSTKLIRSTGALFPRLCFFALKDIQKDEELTFSYGEIRKRSNGLPCYCNSPSCLGTLPSEDT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2053 263 Gene3D SET domain 121 263 IPR046341 -
Psa1g2053 263 ProSiteProfiles SET domain profile. 144 236 IPR001214 GO:0005515
Psa1g2053 263 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 124 252 - -
Psa1g2053 263 SUPERFAMILY SET domain 82 256 IPR046341 -
Psa1g2053 263 Pfam SET domain 124 236 IPR001214 GO:0005515
Psa1g2053 263 SMART set_7 110 242 IPR001214 GO:0005515
Psa1g2053 263 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 124 252 - -
Psa1g2053 263 ProSiteProfiles Post-SET domain profile. 243 259 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2053 Psa-Chr1 149295435 149299676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2053 118 258 C2H2 Transcription Factor Family AT2G23740 32.432 1.15e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa1g2053 SET 4.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2053 K11433 - gmx:100786871 253.832