Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2027 ATGAATGGTGAAGATGACATGTGTGTTAAAGCTTCTAGTTTCATGCTCTTTGGGAAGAAGATCCCGGTGCCGGATTATCATATTCCGGCGAGTTCTCAGATTCAGGCCAATTCTACAACCATGAAATCGAAGAATTCCTCAAATGAAGATGAATCAAAAGTTACTACCAACACTGTGGAAGATACCATGGAAACAAGCAGCAAAGAACAAGACAAAGTCATAAAGAAACCAGACAAGATTGTTCAGTGTCCGAGATGCAAAAGTTTCGACACGAAATTCTGTTATTTCAACAATTACAATGTCAATCAGCCTCGTCATTTCTGTCGGAGCTGTCATAGGTATTGGACAGCAGGTGGAACGATGAGAAACGTTGCTGTTGGTGCAGGGAGACGGAAGAACAAGCATATCACTAATGATAACGGTATTGTCCTTAAATTCGGCCGAGAAAATGGCTCTCTCGACGAATCAAGAACGCCGATGCTTAATCTTGTGAACCAAAAGAGAAATGTTGATGCAGGTGGTGGGAACAATTGTAGAGAAAACGGAGATGAAGAATCGTCCTTATGTGTATCTTCTGTGACGAATGGTTATACTCGAGGAAACGAGTTAACCGAAGGCGAACAAAATAGGTCAAAACATTTGCAGAGTTACCCTTCATCTTCATGGATGATTCCATTGAATCAAAGGTGGAACAATGTTACTTCCATGGTTCAATCATCAATGCAGATGTGTAACCCTTTTGGAATTGATCCTAATGCAATGCAGTGGTGTCACGCGCCGATGGTCGCGGTTACGAACATTTTCACACCAAACATTGGATTGCAATTTGTTCCAGGATCATATGGAAATGGAAATGTTTCAATAGGTTCAAATGGTTGCATTTCACCTTCTTCATCAACTACTAGTAACAGTTTTTGTGAAGGTAATGGTTCAACAATCCCTAGCAAACACACTAGAGATTCTGTTTTGATTGATGAAGAGAAATCATAA 990 0.404 MNGEDDMCVKASSFMLFGKKIPVPDYHIPASSQIQANSTTMKSKNSSNEDESKVTTNTVEDTMETSSKEQDKVIKKPDKIVQCPRCKSFDTKFCYFNNYNVNQPRHFCRSCHRYWTAGGTMRNVAVGAGRRKNKHITNDNGIVLKFGRENGSLDESRTPMLNLVNQKRNVDAGGGNNCRENGDEESSLCVSSVTNGYTRGNELTEGEQNRSKHLQSYPSSSWMIPLNQRWNNVTSMVQSSMQMCNPFGIDPNAMQWCHAPMVAVTNIFTPNIGLQFVPGSYGNGNVSIGSNGCISPSSSTTSNSFCEGNGSTIPSKHTRDSVLIDEEKS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2027 329 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
Psa1g2027 329 MobiDBLite consensus disorder prediction 32 71 - -
Psa1g2027 329 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Psa1g2027 329 PANTHER CYCLIC DOF FACTOR 3-LIKE 32 137 - -
Psa1g2027 329 PANTHER CYCLIC DOF FACTOR 3-LIKE 138 328 - -
Psa1g2027 329 Pfam Dof domain, zinc finger 78 135 IPR003851 GO:0003677|GO:0006355
Psa1g2027 329 PANTHER CYCLIC DOF FACTOR 2 138 328 IPR045174 GO:0003700|GO:0006355
Psa1g2027 329 PANTHER CYCLIC DOF FACTOR 2 32 137 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2027 Psa-Chr1 147880206 147882170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2027 10 198 C2C2-Dof Transcription Factor Family AT5G62430 40.299 1.53e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g2027 zf-Dof 8.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2027 - - mtr:MTR_6g027460 456.062