Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2023 ATGAGTTCACTAAACTTGAACAATGATGGTAATGGTTTATCTTTGGACTTGAATGTTCCTTTTTTATCCCAAGTTCCTTCTTCATCTTCTGCTCCCATTTTGGGTCATGAAGTGTCTGAAAAGTCTGAAATACCCTTTGAGAGTTTCAACCCTTTGATGATCCATCCTAATGGGAATGAGAACATGGTTCCAAACAATGAAGGGTATTTTGGGAATGGTCAAAAAAACATGTTTTTGAATAATGATGAGGCTGAAAAAGAAGCTAAAAGTATGTTTTATGAAACACAGAAATTTATGAACTCTAATCTTTTTATTAGAGGCCATTGGAGACCAAATGAAGATGCTAAGCTTAAAGCACTAGTTGCTGAGCATGGTCCTCAAAATTGGAACACAATTGCTGAACATCTACATGGTAGATCAGGGAAAAGCTGCAGATTAAGGTGGTTTAATCAGCTAGATCCTAAAATTAATAGGGAAGCTTTTAGCAAGGAAGAAGAGTATAAGCTTTTGCAAGCACATAAAATTTATGGCAACAAATGGGCAGCCATTTGTAAACTCTTTCCTGGAAGGACAGACAATGCTGTGAAGAATCATTGGCATGTTATTATGGCTAGGAGGCAAAGGGAGCAATCATCTAGAAAGAAAAGGCCAACATTTCAAAATGCTTCAAATGGATCACTCACAAGTACCATTGATGAGTCTAACTCAACTTTCCCCCATTTCAATTTTGCTACTAGGCCTTTTCTCAATTACCAAGCCTATGGATCACAAATGGGTTTAGTTGGAGCAAGAAACCAAGAAGCAAGGTATTTTGGTTTTGACAAGATTCTCAGTGCTATGAAAGGTTCATCTATAGGTCCCATGGAAAAGCTGAAGAACGTGGTGGATCAATCCAATTATTCAGATTCAAAGTCAGAAATTTCAGTATCTGAGTCAGTTGCAACAAACAGGAACAATGAAACAATTTTGGGAGACAAGATTAAGAAGCCATTTATTGATTTTCTTGGAGTAGGTTATACATAG 1023 0.3695 MSSLNLNNDGNGLSLDLNVPFLSQVPSSSSAPILGHEVSEKSEIPFESFNPLMIHPNGNENMVPNNEGYFGNGQKNMFLNNDEAEKEAKSMFYETQKFMNSNLFIRGHWRPNEDAKLKALVAEHGPQNWNTIAEHLHGRSGKSCRLRWFNQLDPKINREAFSKEEEYKLLQAHKIYGNKWAAICKLFPGRTDNAVKNHWHVIMARRQREQSSRKKRPTFQNASNGSLTSTIDESNSTFPHFNFATRPFLNYQAYGSQMGLVGARNQEARYFGFDKILSAMKGSSIGPMEKLKNVVDQSNYSDSKSEISVSESVATNRNNETILGDKIKKPFIDFLGVGYT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2023 340 PANTHER MYB PROTEIN-RELATED 80 339 - -
Psa1g2023 340 CDD SANT 109 150 IPR001005 -
Psa1g2023 340 MobiDBLite consensus disorder prediction 216 231 - -
Psa1g2023 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 152 IPR017930 -
Psa1g2023 340 Pfam Myb-like DNA-binding domain 106 152 IPR001005 -
Psa1g2023 340 Pfam Myb-like DNA-binding domain 158 201 IPR001005 -
Psa1g2023 340 PANTHER OS08G0435700 PROTEIN 80 339 - -
Psa1g2023 340 Gene3D - 105 157 - -
Psa1g2023 340 SMART sant 105 154 IPR001005 -
Psa1g2023 340 SMART sant 157 205 IPR001005 -
Psa1g2023 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 207 IPR017930 -
Psa1g2023 340 ProSiteProfiles Myb-like domain profile. 153 203 IPR001005 -
Psa1g2023 340 MobiDBLite consensus disorder prediction 206 231 - -
Psa1g2023 340 ProSiteProfiles Myb-like domain profile. 106 152 IPR001005 -
Psa1g2023 340 SUPERFAMILY Homeodomain-like 105 199 IPR009057 -
Psa1g2023 340 Gene3D - 159 227 - -
Psa1g2023 340 CDD SANT 160 200 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2023 Psa-Chr1 147014631 147017315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2023 81 338 MYB Transcription Factor Family AT5G17800 41.762 2.43e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g2023 Myb_DNA-binding 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2023 K09422 - qsu:111993092 258.84