Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2019 ATGGGGAGCAGAAAGCAAGAAGAGAAGATTGAGAAGATTATTAGGGGGCTTATGAAGCTTCCGCCGAATCGGAGATGTATCAACTGTAATAGTTTGGGACCTCAGTATGCATGTACAACTTTTTGGACCTTCATTTGCATAACTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGTCGAAGTTCACTTTGCAAGAAGTTGATGCTCTTCAAAATGGCGGTAACCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAAAACAACGGTTGCCAGATAGCAGCAACGTTGATAAAGTAAGGGAGTTCATAAAGAATGTATATGTAGATAAACGATATGCTGGAATAAAGTCATCTGAAAGGCCTCCAAGAGATGCACAGAGCCCCACAATTCATGATGACGAGATTAGACGTGCAAGTTCTTATCATTCATATTCACAAAGTCCTCCATATGATAATCAATATGAGGATCGGCGCTATGGAAAGCAAGCAGGGGCTCTGACGAGAAAGCCTGGTTCAGATAAAATCCGTTATGAAGGGAAGATGTCTAGTATTATCTATAGTCCTGGTCGTTTCAGTGATCATGCAAATGATGAAAGATTTGCAAATGAGGGATCTGGTCCAAGAAATTCCGACTTTTCCGTGTCCAGTGGTCATGAGCAATTCAAATCCGATGTTCAGTCTCCTCAGTTTCGTAAGGACATTGAGTTTAACAGCCCATCTCATAAACGTCCTGGTTCTAGTTCAAGTGAAGATATGTGGACTCGAGCAAAAAATGCAGCTCTCGAATCTAATGCCGCTGCCAAGAGAGATGCAGATGGAATTCGTCATCCACAGAGAACTACATCATTGCAACCAACCGACAGCAACTTTTCAACCTTAAGATCTTACAATTCTGGCAGTTCAATTGATTTTTTCTCGGAAGCTGTCCAATCTTCAGGGTCCCTTCAAGATAATGCATCAGGAATTTCACTGCCATCTGAACCTGGTTCTAGACAATCGAACCTAGAAAGGTTCCGTGGTCATCGTAGTCGAAGTTCTGTTGTTCTTTCTCAAACAGCTGCACCATCTCAAGCTCCATTGGGAGATCTGTTTCAATTATCTGACATGACTGCAGCTACATCTTTCAAGGGAAATCAACCTACACAAACATCCCAAGTCGCATCTATTGATTTCTTTGTGAAGGCTACTGCAACCTCTGATGCAAAATCGGTGGAGATATCCATCCCTAAAAATGAAGGGTGGGCAACATTTGATACGCCTCAGTTCACATCATCTAATGCACAAGTGGAAACTCATGCGGCAGTACCTTTAAGTGCTGAATCTTTGCAGGATAGATTTGATCCATTTTCCACCGTGAATGGTAATATGCAATGGCCATCTTTTGAAATTTCTAATGTTGGTGTATCTTCTGTTACATCTGATGTATGGCAAGACGGTGTATGGAATGCCGTAAAACAAGTTCCTGTTGCGGCTACAGATACTCAATCATGGAATGCATTTGAAGATTCTGGTACACATTTTCCTGTGGATGGCAGTAGTCAAGGATTAAATTTGCACTATTTTTCATCAGAGGTTTCGGGTTTAAGTGCTTCTTCTGAGGGACCCAATAAAGATGGAATCCAAGGTGTTGCTCCTATTGGAGGTTTTGATAATCATGTCATCCCATCACACGGAGATATTCAGCCTAATGGAATCAGTCGTAAATCAACTAATCCATTCGATTTTCCCTTTGATTCTGATGTAGAGCCGAGCAATTTGTTCCTTGATATGGGCTCTTTGCAAGCTGCTCTTCCAGATGCCCTCTTACCAGCCACATTTGGTGGTATCCCTGAACCCTGGCTCCCTCAAAATACAGCGACACCATATATTTCCTCTGCTGGTGAAGGTGGTTTATCATTCATGACCGTGCAAACACCAAGTTCCCACTTACAGAACATCCAAGCACAAGAACCAGTTGCTTCGATTGGCGGAAATCCTTTTGCTTAG 2013 0.4223 MGSRKQEEKIEKIIRGLMKLPPNRRCINCNSLGPQYACTTFWTFICITCSGIHREFTHRVKSVSMSKFTLQEVDALQNGGNQRAREIYLKNWDFQKQRLPDSSNVDKVREFIKNVYVDKRYAGIKSSERPPRDAQSPTIHDDEIRRASSYHSYSQSPPYDNQYEDRRYGKQAGALTRKPGSDKIRYEGKMSSIIYSPGRFSDHANDERFANEGSGPRNSDFSVSSGHEQFKSDVQSPQFRKDIEFNSPSHKRPGSSSSEDMWTRAKNAALESNAAAKRDADGIRHPQRTTSLQPTDSNFSTLRSYNSGSSIDFFSEAVQSSGSLQDNASGISLPSEPGSRQSNLERFRGHRSRSSVVLSQTAAPSQAPLGDLFQLSDMTAATSFKGNQPTQTSQVASIDFFVKATATSDAKSVEISIPKNEGWATFDTPQFTSSNAQVETHAAVPLSAESLQDRFDPFSTVNGNMQWPSFEISNVGVSSVTSDVWQDGVWNAVKQVPVAATDTQSWNAFEDSGTHFPVDGSSQGLNLHYFSSEVSGLSASSEGPNKDGIQGVAPIGGFDNHVIPSHGDIQPNGISRKSTNPFDFPFDSDVEPSNLFLDMGSLQAALPDALLPATFGGIPEPWLPQNTATPYISSAGEGGLSFMTVQTPSSHLQNIQAQEPVASIGGNPFA* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2019 670 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Psa1g2019 670 MobiDBLite consensus disorder prediction 286 300 - -
Psa1g2019 670 PANTHER ARFGAP/RECO-RELATED 1 670 IPR044820 GO:0005096
Psa1g2019 670 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 670 - -
Psa1g2019 670 MobiDBLite consensus disorder prediction 325 363 - -
Psa1g2019 670 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Psa1g2019 670 MobiDBLite consensus disorder prediction 234 248 - -
Psa1g2019 670 MobiDBLite consensus disorder prediction 210 300 - -
Psa1g2019 670 MobiDBLite consensus disorder prediction 325 342 - -
Psa1g2019 670 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Psa1g2019 670 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Psa1g2019 670 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Psa1g2019 670 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Psa1g2019 670 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Psa1g2019 670 MobiDBLite consensus disorder prediction 215 233 - -
Psa1g2019 670 MobiDBLite consensus disorder prediction 134 148 - -
Psa1g2019 670 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Psa1g2019 670 MobiDBLite consensus disorder prediction 123 165 - -
Psa1g2019 670 CDD ArfGap_AGFG 11 121 - -
Psa1g2019 670 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2019 Psa-Chr1 146730052 146737876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2019 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 4.61e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2019 K15044 - gmx:100788316 889.026