Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2017 ATGTCACAAATGAATCACTTTGAAAGAGGCGTTGGTAGATCTAATGAAGAAGACACTGATAACTCAAATGATGGAAATCAACCATCCTACGCCCGTTTCACGACTCATCAAACATCGATACTTGAAAAATTCTTAGAAGAGGATAGTCATCCAAATGAGGCCCAACGAAATCAATTAGCTAGGGAGACTGGACTTGAGCCCATACAAGTAAAATATTGGTTCCAAAATAGAAGAACTCTAATAAAGAATCAAAACAAGAGAGCAAGTAATAATGCTCTTCGTGCTGAGAATGATAATCTTCTTCAAGAAAATCTTAAAATAAAAGAGGCATTAAATGGCATAGCTTGCACAACTTGTGGGGGTCCTCCATTTCCTTATAAAGAGCATGAACTTTACATGCAAAAGATGGGAGAACAAAACAACCGAATTAAAGACGAGGTTGACAAAATGTGGATCCTTATAACAAGGTACGCAAGGAATGAGATATCATTACATGAGTTTGAAGAATCTGTTGCTCAAACAAAAGCATTTGCTAGAAACTTAGAAGTTGAAATTCCACCAAGACAAGAAATTGGTGGAAGTTCAAGTCATAATCACAATCATGGTAGGCTAGTGAATGAGCCAGAACCAATTTGTAACGTGGAAAAATCAATAATATCTCAAATTGCAACTATTGCAATGAATGAATTAGTTATACTTTTGCGTGTGAAAGAACCTTTTTGGATGAATTCTTCTAGTGTGGAAGAAGAGAAATTAACTCTTTCTTATGAACATTATGATCAAGCTTTCCCAAAACAAAATCACTTCAATGGTGACAATGTAGTTAAGGAATCATCAAAGTATACAGCAATTGTCAACATTCCTATCACAGAATTGATTGATATGTTTATAGATAAGGAGAAATGGACAATTATATTTCCAACACTTGTTTCAAAATCTGAAATAGTTAAAGTGTTTGAAAATGGATCAATCGAAAATCGAGATGGAGCATTGCAATTGATGCATGAAGAAATGCACATTCTGTCACCTCTTGTGCAAACCCGTGAATTTAACGTCATTCGCTATTGTAAGCAAGTTGATGTTGACGTATGGGTAATAACTGATGTGTCGTATGATTCCTCTCGATCAACAATCACCCCTCTTGCTCGCTCTTGGAAACATCCATCTGGATGCTTGATTAACAAGATATCTACAAATTCTTGCATGGTTACTTGGATCGAAAACGTTGAAGTGGATGATAAGATTCATACACACAATCTATATAGAAATCTTATTGATACATATGATTTATACGGAGCAAAAAGTTGGGTTAAGGAGCTTCAAAGAATGAGTGAGAAGGCTGCTACTTTCTATGATCCAATTATACATGATCAAGAATCGGCAGGAGTTATCCAAACATCCGACGGAAGGATGAGTGTGATGAAGCTTGCTCAACGAATGGTGAAGATGTATTTTGAATGTTTGGCCATGCCAAATAAATTGGAATTTCATAATTTTATTGAAAACAACATTGGAGGCATAAAAATAGCTACCAACAAAAATACAAACGAAGGAAAGCCTAATGGATTGATTGTTCGTGCTACTGCCACACTTATCATTCCTCTATCACCTAATAAAGTTTTTGAGTTCCTAATGGACCATACTAAAAGAAATCAGTGGGATGTTCTTGCCTATGGGAATCCAGTGCAAGAGATTGGACATATCTCTCATGGACATCCAACAAATTTTATATCTATTATCAAGCCTTCGATACCGGGTATTGATAACCAACTCATGATTCTTCAAGAAAGCTTTGTATCACATGTGGGATCTTATGTTATCTATGCTCCAATAGATTCTACATCTTTAAATTTTGCCATTAATGGTGGAAACCCAAGAGGAATTCATATTCTTTCTTCTGGTTTTGGTGTGTGTTCAAGTAAAAAAGAAGATGAGAGTTCAAAAGATGAATCTTTGTTGACTCTAGCTTGTCAAACTTTGGCAAGTGGTTTAGATGGACCTATGATGTTGACTACACAAGCTGTATCAGATGTCAACAACCTTTTGACCACTACACTTGTTAAAGTCAAGGATGCACTTATGGGGATTTAA 2091 0.3577 MSQMNHFERGVGRSNEEDTDNSNDGNQPSYARFTTHQTSILEKFLEEDSHPNEAQRNQLARETGLEPIQVKYWFQNRRTLIKNQNKRASNNALRAENDNLLQENLKIKEALNGIACTTCGGPPFPYKEHELYMQKMGEQNNRIKDEVDKMWILITRYARNEISLHEFEESVAQTKAFARNLEVEIPPRQEIGGSSSHNHNHGRLVNEPEPICNVEKSIISQIATIAMNELVILLRVKEPFWMNSSSVEEEKLTLSYEHYDQAFPKQNHFNGDNVVKESSKYTAIVNIPITELIDMFIDKEKWTIIFPTLVSKSEIVKVFENGSIENRDGALQLMHEEMHILSPLVQTREFNVIRYCKQVDVDVWVITDVSYDSSRSTITPLARSWKHPSGCLINKISTNSCMVTWIENVEVDDKIHTHNLYRNLIDTYDLYGAKSWVKELQRMSEKAATFYDPIIHDQESAGVIQTSDGRMSVMKLAQRMVKMYFECLAMPNKLEFHNFIENNIGGIKIATNKNTNEGKPNGLIVRATATLIIPLSPNKVFEFLMDHTKRNQWDVLAYGNPVQEIGHISHGHPTNFISIIKPSIPGIDNQLMILQESFVSHVGSYVIYAPIDSTSLNFAINGGNPRGIHILSSGFGVCSSKKEDESSKDESLLTLACQTLASGLDGPMMLTTQAVSDVNNLLTTTLVKVKDALMGI* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2017 696 MobiDBLite consensus disorder prediction 1 30 - -
Psa1g2017 696 SMART HOX_1 26 88 IPR001356 GO:0003677
Psa1g2017 696 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 21 694 - -
Psa1g2017 696 SUPERFAMILY Bet v1-like 468 664 - -
Psa1g2017 696 Pfam Homeodomain 31 82 IPR001356 GO:0003677
Psa1g2017 696 SUPERFAMILY Homeodomain-like 20 90 IPR009057 -
Psa1g2017 696 CDD START_ArGLABRA2_like 216 445 - -
Psa1g2017 696 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Psa1g2017 696 Coils Coil 83 110 - -
Psa1g2017 696 Gene3D - 12 101 - -
Psa1g2017 696 Pfam START domain 224 445 IPR002913 GO:0008289
Psa1g2017 696 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 694 IPR042160 -
Psa1g2017 696 SMART START_1 221 446 IPR002913 GO:0008289
Psa1g2017 696 CDD homeodomain 32 85 IPR001356 GO:0003677
Psa1g2017 696 Gene3D - 247 442 IPR023393 -
Psa1g2017 696 ProSiteProfiles START domain profile. 212 449 IPR002913 GO:0008289
Psa1g2017 696 SUPERFAMILY Bet v1-like 220 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2017 Psa-Chr1 146062747 146066806 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2017 24 695 Homeobox Transcription Factor Family AT1G73360 36.506 4.57e-144 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa1g2017 START 4.5e-27 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2017 K09338 - gmx:100795075 577.785