Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2015 ATGGATTACTCAATGAGAGTTGCTGGTGAATTTGATGAAGATGACATTGATAATTCAAATAGATCATCCAACATGCGTTTTACACCCTATCAGATATCCGTACTTAAAAAATTCATAGAACAAGATTGTCATCCAAGTAAGGAGCAAAGAAGTCAATTAGCTGAAGAGATTGGGCTTGAGCCCATACAAGTAAAATATTGGTTTCAAAATAGAAGAACTCTATTAAAGAAACAAAATAGTAGAGAAAATAATAGTGCTCTTCGTGCTGAGAATGAGGATCTTCTTCATCAAAATATTCATATGAAAGAGACATTGAAGGCCAAACTTTGCACTACCTGTGGGGGTCCTCCAGTTCCTTCTAAAGAGAATGAACTTTCAATGCAAAAGATGGCAGAGCAAAACACCAGACTTAAAGAAGAGGTTGACAAAGCTTCTACTCTCTTAGCAAGGTATTCAAAGAAAGAGATATCACTACATGAGTTTAAGCAATCTCTTGCTCAAACAAAAGAATTTGCTAGAAACTTGGAAGTTGAAATTCCACTAAAACAAGAAATTGGTGGAAGTTCAAGTCATAATCACAATCATGGTATACTAGCGAATGAACCAAAATCAATTGGTGATGTAGAAAAATCAATAGTATCTCAAATTGTAGCTATTGCAATGAACGAATTAGTGACACTTGTGCGTGTCAATGAACCTTTTTGGACGGACTCTTCTAGTGTGAAAGATGAGATATTAACTCTTTCTTATGGAATTTATGAGCAAGCTTTCCCAAAACCAAATCACTTAAAAAGTGAAAATGTAGTTAAAGAATCATCAAAGTATACTTCTGTTGTCAACATCAGTAGCATGGAATTGATTGACATGTTCTTGGATCCGGTCAAATGGGCGAAGTTGTTCCCAACAATTGTTTCAAAGTCCGAAATAATTAAAGTGTTTGAAAATGGATCGATGGGAAATCGAGATGGAGCATTGCAATTGATGTATGAACAAATGCATATTCTATCACCTCTTGTACGACCTCGTGAATTTTTCATCATTCGCTATTGTAAACAAATTGATGTTGGAGTATGGGTGATAACAAATGTGTCATATGATTCCTCTCTACGAGAAATTAGTCCTCTTGCTCGCTCTTGGAAACATCCGTCTGGATGCTTGATTCAAGAAATGTCTCTCGATTTTTGTTCGGTTACTTGGGTTGAACATGTGGAATTGGATGATAAGATCCATACACATACACATGACCTATACAAATATCTTATTGATATCAATAATTTATATGGAGCAAAAAGTTGGATTAAAGAGTTTCAAAGAATGTGTGACAAATCAACCAGTTTCCATGTTCAAAAAATACCTGATCGAGAATCTGAAGGAGTGATTCAAACAATTGAAGGGAGAAAGAGTGTGATGAAGCTTTCACACCGAATGGTTAAGATGTTTTGTGAAAGTTTAGCCCTAAAAAATAAACTGAACTTTCAAAGTTTAATCGAAGAAAGTGTTGGAGGAATTAACATATCTGTTGATACATCTCCTAGAAAAGGAAAACCAAATGGCACAATTATTTGTGCTACTTCAACACTTCTCATTCCTCTACCAGCTGAAAAAGTTTTTGAGTTCCTCATTGATCATACACAAAGATTTAAGTGGGATGTACTTGCATATGAAAATCAAGTGCAAGAAATTGCGCATATCTCTAATGGACATCCGAGAAATTTCATTTCAATTATCAAGCCTTCGATTCCGGGTATTGAGAACGAGACAATGATTCTTCAAGAAAACTTCAAATCATCAGTGGGTTCATATGTTATATTTACTCCTACTGATGTTGCATCTTTACAAGCTGCCATTAAGGGTGAAGACACAAGAGGAATGCAAATTCTCTCTTCTGGATTTGTTGTGTGCTCAAGCGAAAAAGAAGATGGAAACTCCAAAGTTGGTTCTTTGTTGACTCTATCTTATCAAATTCTGGCTTCTAGTTCAGATGGAGCTATGATGTTGAGTGCACAAACTGTATCAAACGTCAACAACCTTTTGACTACTACCCTTCTCAAAGTGAGAGATGCACTCATGATGATGTAA 2079 0.3559 MDYSMRVAGEFDEDDIDNSNRSSNMRFTPYQISVLKKFIEQDCHPSKEQRSQLAEEIGLEPIQVKYWFQNRRTLLKKQNSRENNSALRAENEDLLHQNIHMKETLKAKLCTTCGGPPVPSKENELSMQKMAEQNTRLKEEVDKASTLLARYSKKEISLHEFKQSLAQTKEFARNLEVEIPLKQEIGGSSSHNHNHGILANEPKSIGDVEKSIVSQIVAIAMNELVTLVRVNEPFWTDSSSVKDEILTLSYGIYEQAFPKPNHLKSENVVKESSKYTSVVNISSMELIDMFLDPVKWAKLFPTIVSKSEIIKVFENGSMGNRDGALQLMYEQMHILSPLVRPREFFIIRYCKQIDVGVWVITNVSYDSSLREISPLARSWKHPSGCLIQEMSLDFCSVTWVEHVELDDKIHTHTHDLYKYLIDINNLYGAKSWIKEFQRMCDKSTSFHVQKIPDRESEGVIQTIEGRKSVMKLSHRMVKMFCESLALKNKLNFQSLIEESVGGINISVDTSPRKGKPNGTIICATSTLLIPLPAEKVFEFLIDHTQRFKWDVLAYENQVQEIAHISNGHPRNFISIIKPSIPGIENETMILQENFKSSVGSYVIFTPTDVASLQAAIKGEDTRGMQILSSGFVVCSSEKEDGNSKVGSLLTLSYQILASSSDGAMMLSAQTVSNVNNLLTTTLLKVRDALMMM* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2015 692 Coils Coil 77 97 - -
Psa1g2015 692 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 15 690 - -
Psa1g2015 692 CDD homeodomain 26 79 IPR001356 GO:0003677
Psa1g2015 692 Pfam START domain 220 441 IPR002913 GO:0008289
Psa1g2015 692 SUPERFAMILY Bet v1-like 212 442 - -
Psa1g2015 692 SUPERFAMILY Bet v1-like 465 649 - -
Psa1g2015 692 SMART START_1 215 442 IPR002913 GO:0008289
Psa1g2015 692 CDD START_ArGLABRA2_like 210 440 - -
Psa1g2015 692 Pfam Homeodomain 25 77 IPR001356 GO:0003677
Psa1g2015 692 ProSiteProfiles START domain profile. 206 445 IPR002913 GO:0008289
Psa1g2015 692 Gene3D - 234 439 IPR023393 -
Psa1g2015 692 Coils Coil 127 154 - -
Psa1g2015 692 Gene3D - 8 96 - -
Psa1g2015 692 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
Psa1g2015 692 SMART HOX_1 20 82 IPR001356 GO:0003677
Psa1g2015 692 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Psa1g2015 692 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 690 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2015 Psa-Chr1 145927469 145931758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2015 26 689 Homeobox Transcription Factor Family AT1G73360 38.439 8.20e-162 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa1g2015 START 9e-25 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2015 K09338 - gmx:100795075 604.749