Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2009 ATGGATCATTACAAGGTTCTGGGTTTACACAAAACAGCATCTAAAGAAGAAATCAAATCAGCATTCAAAAAACTCGCATTTCAATTTCATCCAGATAAGCATTCTCAATCACCAAAAGCTGTAAAAGACAATGCAACGGCTCGATTCAAACAGGTTTCCGAAGCATACGAAATTCTCATGGATGATCGTAAACGAGCTGAGTATAATTACCGGTGGCGTTCCGGTGCCGGTGGGAGAAGTGGTTATACTGCTGGTGGTAGTGGTGGTGGTAATAGCAATTATTACTCTCAGTATAGTTATGGATATGGTAGAAGTGGGAATAGCTATGAATATAAAAGTAGGTCTGGGTTTAATGGTGGTGGTGGTTTTGCGTCGAAGTTTGAACTTGCTATTAGGATTTTGACGGCGAGATCTTATCTTCTCAATCTTGGATTTGCAGCCGCTATATTAGGTGTGATGATTGTTGTTGATACAAGTGGAGAATCCTTATGGAAAATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAACACCATTGACAAAGCAAAAGCGTATAAAGAAGATAACGTGAAAGAACGTCCTTAA 588 0.3929 MDHYKVLGLHKTASKEEIKSAFKKLAFQFHPDKHSQSPKAVKDNATARFKQVSEAYEILMDDRKRAEYNYRWRSGAGGRSGYTAGGSGGGNSNYYSQYSYGYGRSGNSYEYKSRSGFNGGGGFASKFELAIRILTARSYLLNLGFAAAILGVMIVVDTSGESLWKMQNSGKSFEEAMNTIDKAKAYKEDNVKERP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2009 195 CDD DnaJ 2 61 IPR001623 -
Psa1g2009 195 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Psa1g2009 195 PANTHER CO-CHAPERONE PROTEIN DJLA 1 178 - -
Psa1g2009 195 PANTHER CHAPERONE PROTEIN DNAJ 72 1 178 - -
Psa1g2009 195 SMART dnaj_3 1 64 IPR001623 -
Psa1g2009 195 Gene3D DnaJ domain 1 127 IPR036869 -
Psa1g2009 195 SUPERFAMILY Chaperone J-domain 1 95 IPR036869 -
Psa1g2009 195 Pfam DnaJ domain 2 69 IPR001623 -
Psa1g2009 195 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Psa1g2009 195 PRINTS DnaJ domain signature 4 22 IPR001623 -
Psa1g2009 195 PRINTS DnaJ domain signature 22 37 IPR001623 -
Psa1g2009 195 PRINTS DnaJ domain signature 44 64 IPR001623 -
Psa1g2009 195 PRINTS DnaJ domain signature 64 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2009 Psa-Chr1 145655439 145659467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2009 3 69 C2H2 Transcription Factor Family AT1G74250 43.284 1.30e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2009 - - gmx:100782769 265.388