Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1977 ATGGAGTTGTTTATTCCCACATCAACAACAATAATGATGTGGGTTCTTACTGTTATACTTGCTGTGATTCCATGGTATCTTCTCAACAAGTTGTGGTTTAAGCCAAAGAGTTTTGAAAAACTTCTCATATCTCAAGGTCTTCATGGTAACTCATATAAGCTCTCACTGTTTGACAACTCAAAGCAAAATTATATGATGAAGCTGCAACATGAAGCTAAATATAAATCCATTGGTCTTTTCAAAGAACCTGCACCATCTATGTTCTCACCTGTTCATCAAACTGTTCTCAAATATGGAAAGAAATCATTTTTATGGGAAGGTACAACACCAAAGGTTGTCATCACAGACCCTGACCAAATTAAGCAAGTCTTTAACATGATTGAGGACTTCCCCAAACCTAAATTATATTCACTTGCCAATTGCGAAGAAATGATAAGCAAATGGAAGGAATTGTTGTCACCAGATGGAACATGTGAGATTGATGTTTGGCCTTTCCTTCAGAATTTGACGCTCGATGTAATTTCTAGAACAGCATTTGGAAGCAGCTATGTTGAAGGAACAAAAATATTTGAACTTTTGAAGAGCCAGGGATTTCTTTTGATGACAGAGAGATACGCAAACATTCCATTATGGTGGCTTCTATCAACAACTACCAAGAGAAGGATGAAGGAAATTGATAAAGATATAGATGATTCACTTGCGGAAATCATTGAAAAACGAGTAAAATCTTTGAAGAATGGTGAAACCGTCAATGACGATTTATTAGGCATACTTTTGCAATCAAATCAGGCCGAAAATCAAGAACATGGAAACAGTAAGAGTATTGGAATGACCACCGAAGAAGTGATAGATGAATGCAAACTTTTTTACAATGCGGGGCAAGAGACCACTTCAGTTTTGCTGGTTTGGACAATGGTGTTGTTAGGCAGGTATCCTGAATGGCAAGCTCGTGCAAGAGAGGAAGTTTTGCAAGTTTTTGGAAACCAAAATCCAAACTTTGGAGGGTTGAGTCAACTTAAAATTGTAACAATGATTTTGTACGAGGTACTAAGGTTATACCCGCCTACAGTTTATTTCAACCGAGCTATTCGAAAGGATTTGAAACTTGGAAACCTTTTCTTATCTAAAGGAACGCAAGTTTCTTTACCAATACTTTTGATTCACCAAGATCATGATATATGGGGTGATGACGCAAAAGAGTTCAAACCCGAAAGGTTTGCCGATGGAGTTGCAAAGGCAACAAAAGGTCAAGTTTGTTATTTCCCTTTTGGATGGGGTCCTAGAACTTGTATCGGACAAAACTTTTCCTTATTAGAAGCAAAGATAACGATATCATTGCTTCTGCAGAATTTCTCATTTGAGCTTTCTCCTACTTATAAGCATGCTCCTACCACTGTGCTTACTTTGCAGCCAAAATATGGGGCAACCATCATTTTGCATAAATTGTAA 1449 0.3741 MELFIPTSTTIMMWVLTVILAVIPWYLLNKLWFKPKSFEKLLISQGLHGNSYKLSLFDNSKQNYMMKLQHEAKYKSIGLFKEPAPSMFSPVHQTVLKYGKKSFLWEGTTPKVVITDPDQIKQVFNMIEDFPKPKLYSLANCEEMISKWKELLSPDGTCEIDVWPFLQNLTLDVISRTAFGSSYVEGTKIFELLKSQGFLLMTERYANIPLWWLLSTTTKRRMKEIDKDIDDSLAEIIEKRVKSLKNGETVNDDLLGILLQSNQAENQEHGNSKSIGMTTEEVIDECKLFYNAGQETTSVLLVWTMVLLGRYPEWQARAREEVLQVFGNQNPNFGGLSQLKIVTMILYEVLRLYPPTVYFNRAIRKDLKLGNLFLSKGTQVSLPILLIHQDHDIWGDDAKEFKPERFADGVAKATKGQVCYFPFGWGPRTCIGQNFSLLEAKITISLLLQNFSFELSPTYKHAPTTVLTLQPKYGATIILHKL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1977 482 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 423 432 IPR017972 GO:0005506|GO:0016705
Psa1g1977 482 SUPERFAMILY Cytochrome P450 87 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PANTHER CYTOCHROME P450 FAMILY MEMBER 11 137 - -
Psa1g1977 482 PANTHER CYTOCHROME P450 FAMILY MEMBER 140 479 - -
Psa1g1977 482 Pfam Cytochrome P450 142 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PRINTS E-class P450 group I signature 95 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PRINTS E-class P450 group I signature 420 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PRINTS E-class P450 group I signature 430 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PANTHER CYTOCHROME 11 137 - -
Psa1g1977 482 PANTHER CYTOCHROME 140 479 - -
Psa1g1977 482 Gene3D Cytochrome P450 79 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PRINTS P450 superfamily signature 292 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PRINTS P450 superfamily signature 421 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1977 482 PRINTS P450 superfamily signature 430 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1977 Psa-Chr1 142738030 142740619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1977 16 482 Cytochrome P450 AT3G14690 48.242 1.44e-161 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1977 - K17873 mtr:MTR_8g042060 702.59