Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1976 ATGGTGAGCAAAAATCTAACAGAAATCAAAGAAGATCATGAATATGGTTATGATAGACACAAAGATTTGAAGGCTCTTGATGAATCAAAAGCAGGTGTAAAGGGCCTTGTAGACGCTGGTTTATCCAAGCTCCCTAAAATATTCATTCATGAACAGGATAAAACAACCACTTCCAACAATCTCAGTATTCCACTCGTTGACTTTGGACCTCTATTTACAAATCCAACAAATTCCAGTTCACGTTTTGAGATAATTGAGAAATTAAAGTATGCAAGTGAGAAATGGGGATTCTTTCAAATAATCAACCATGGAATTCCAACCACTGTTTTGGATGAAATGCTTGATGGGGTGGTTAGATTTCATGAACAAGACACTGAGATCAAGAAAGAGTTTTATTCTCGTGATGTTACTAAAAGGGTTTATTATAACACCAATTTTGATTTGTATGTTACTCCAGCTGTTAATTGGAGGGATACTCTCTCTTGTGTTATGGGCCCTCAGTCTCTTGATCCTCAGAAACTGCCTACAGTTTGCAGAGATATAACAGTTAAATATTCGGAGTATGTTAAGAAAGTGGGAATAGTTCTGTTTGAATTGCTTTCTGAAGCATTAGGCCTCAATTCCAGTTACCTCAAGGACATAGATTGTGCAGAAGGAATTTTTCTAATTTCTCATTATTACCCACCTTGCCTTGAGCCTGAACTCACTTTTGGCACAAGTGCTCATTCTGACAGCAGCTTCCTCACTATTCTTCTTCAAGATCAACTTGGTGGCCTCCAAGTTTTCCATGAAAATCAGTGGATTGATGTCACACCGATTCCCGGTGCTTTGGTCGTTAACCTTGGTGACTTAGTGCAGCTAATCACAAACGATAAGTTTCTGAGCGTTAAACACCGGGTTCTGGCACAAAAAATTGGACCAAGAGTTTCAGTAGCATGCTTTATCAGGCAGCATCTTTCCCCTGAGAATTTAAAACGATATGGACCTATAAGTGAGTTGCTTACACCAGAGAATCCTCCAATTTACAAGGAAACATCAGTGAAGGATTTGGTCTCACACTACTATGGGAAAGGGCTAGATGGAGATCAAATTGCGTCCTTAGAAGATTATGGCGCAAGAAGAAAACTCATTTGGGCCTGGCCGAAACATTTGGGATTCAAAGAGGCGCAAGTGAATCCAAGCAGCGACGTTCACGTGAAGCTCCGCCTTCGCGTTTCACGTTCATCTCTCTTCATCTCTTCTTCTCCAATCCGTCTCTGCATCTTCACGTTCGCAACGAAAAACGACCAAATGAACACAGTTCTGCAACGTCCGATCGTGTCCATCCTTCGACCTCCACATTGGCTCATCTTTTATGCGCTAAGAATTGAAACGACGAAATCGAAAACGAAGCATGTTCCTTCTTCTTCTCCTCAACCTTTTGCTTCGTTTTTCTCTTGCTTCTTCTCAAACTCCCTGCTACCGTGCGTTGTTGTGAAGTTGGCGTCCAATGTAATCCTGGAAGCATCCCATATATCATGCTTATCAATCTTGGAGCAGTTATGTGGACAGCATAACAGGGAGTATTGTAGCATTGCCGATGTTGAAATTTTGGTTGAGATCTTTGAACATGACATGTACAAGAATTCAACAGAAAAAACAAACAACACAGCATACCAATCCAACATTAACAAAGTTCTTTCATGGATAGACTCTGATTCTGCAGCAGGCACAGTATCTAACCAAACCACCATTCATAGCAGCAGCAACAACAATGATGATGATGATGTTTATGGGTTCTATGATTGTCGTGGTGATGTCAGAGGAACTTTCTGTAAATTTTGTGTCAACACTGCTGTCAAAGATATCAGTCAGCGTTGTCCGAGCAGCGTCTCTGCTATCATATGGTATGACCTATGCATCGTAGGATTTTCTAATCACAATATCCCAGGAAAAGTTTACACAACCCCAACATGGAATTTTACCGGAACCAAAACTGTTAAGGACTCAACTGAACTTGGAAAAACAGAAAACGACATGAGGAGTTTGATAGGTAAAGTGACTTCAGAAGAAGCCAATGTCAATTGGGCAAAGGGTGAGTTCGACTTGAGTGACAACGAGAAAAGGTATGGCTGGGTGCAGTGTAGTAGAGACATTAGTAAGGATGGTTGCAGACAATGTTTGGAGGCTGTGTTGGATATAGTTCCTCATTGCTGTGGAACAAAGGTAAAATGGGCAGTGTTGTCTCCTAGTTGTGGGATGGAGATTGATGATAATAAGTTCTACAACCTGCAAACAGGATCTCCTTCTTCTCTGTCGCCAAATCCAGGCAAGAAGAAAGGTGGAAGTAATATCAAAACCTTGATGATCATCATCATTTTAAGCGTACTGGTGGCAGTAGCTCTACTAGTTTATTGTGTCTACTACTACCGGAGAAAGAAAGGTGAGTTACTGATGAGTAGGACCATATCTTTCCGAGACCGTGTTCATAGTGAGGATTCGTTAAACGGAGACCTTCCTATAATCCCTTTAACTTTAATTCAACAAAGCACTGATAACTTTTCAGAATCATCTAAATTAGGAGAAGGTGGATTTGGTCAAGTTTATAAGGGTGTTTTACCAGATGGGACCGAAATTGCGGCCAAACGGCTCTCAGAAACGTCAGGCCAAGGTTCTGAGGAGTTCAGGAATGAAGTTACTTTCATAGCTAAACTACAACATAGAAACCTTGTGAAACTCTTGGGGTTCTGCTTTGAAGAAAATGAAAATATACTGGTATATGAGTACATGCCAAATTCAAGCCTTAACTTTCACCTTTTCAATAAGGAAAAACATAAGCATCTAGATTGGAAATTACGACTAAGCATTATCAATGGAATCGCAAGAGGACTGCTATACCTTCATGAAGATTCTCGACTTAGAGTAATCCATAGAGATTTGAAAGCCAGCAATGTTCTTCTCGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTAGCAAGAACATTTGAAAAAGATCAATGTCAAACAAAAACAAAAAGAGTTTTTGGCACCTATGGATACATGGCTCCAGAATATGCTATGGCTGGAATATTTTCAGTAAAATCCGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATAGTTTACGGAAAAAGAAATGGAGACTTCGTTCTTTCAGAACACATGCAAAGTCTTCTATTATATACTTGGAAACTTTGGTTTGAAGGAAAAAGTTTAGAATTAATCGACCCGTTCCACAAAAACACATACGTTGAAAGTGAAGTCATGAAGTGTATACATATTGGTTTATTGTGTGTACAAGAAGATGCGGCGGATAGACCAACCATGTCCACCGTTGTTTGCATGTTAGGGAGTGACACAGTAGCCCTTCCAAAACCCACACAACCAGCATTTTCAGTTGGGAGAATGTTCAAGAATGAAGATCAAGTTTCAAAAAATTCTAAGAACAATTCTGTTGATGAAGTAACCTTAACTAGTGTTTCAGCTAGATAG 3498 0.3968 MVSKNLTEIKEDHEYGYDRHKDLKALDESKAGVKGLVDAGLSKLPKIFIHEQDKTTTSNNLSIPLVDFGPLFTNPTNSSSRFEIIEKLKYASEKWGFFQIINHGIPTTVLDEMLDGVVRFHEQDTEIKKEFYSRDVTKRVYYNTNFDLYVTPAVNWRDTLSCVMGPQSLDPQKLPTVCRDITVKYSEYVKKVGIVLFELLSEALGLNSSYLKDIDCAEGIFLISHYYPPCLEPELTFGTSAHSDSSFLTILLQDQLGGLQVFHENQWIDVTPIPGALVVNLGDLVQLITNDKFLSVKHRVLAQKIGPRVSVACFIRQHLSPENLKRYGPISELLTPENPPIYKETSVKDLVSHYYGKGLDGDQIASLEDYGARRKLIWAWPKHLGFKEAQVNPSSDVHVKLRLRVSRSSLFISSSPIRLCIFTFATKNDQMNTVLQRPIVSILRPPHWLIFYALRIETTKSKTKHVPSSSPQPFASFFSCFFSNSLLPCVVVKLASNVILEASHISCLSILEQLCGQHNREYCSIADVEILVEIFEHDMYKNSTEKTNNTAYQSNINKVLSWIDSDSAAGTVSNQTTIHSSSNNNDDDDVYGFYDCRGDVRGTFCKFCVNTAVKDISQRCPSSVSAIIWYDLCIVGFSNHNIPGKVYTTPTWNFTGTKTVKDSTELGKTENDMRSLIGKVTSEEANVNWAKGEFDLSDNEKRYGWVQCSRDISKDGCRQCLEAVLDIVPHCCGTKVKWAVLSPSCGMEIDDNKFYNLQTGSPSSLSPNPGKKKGGSNIKTLMIIIILSVLVAVALLVYCVYYYRRKKGELLMSRTISFRDRVHSEDSLNGDLPIIPLTLIQQSTDNFSESSKLGEGGFGQVYKGVLPDGTEIAAKRLSETSGQGSEEFRNEVTFIAKLQHRNLVKLLGFCFEENENILVYEYMPNSSLNFHLFNKEKHKHLDWKLRLSIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARTFEKDQCQTKTKRVFGTYGYMAPEYAMAGIFSVKSDVFSFGVLLLEIVYGKRNGDFVLSEHMQSLLLYTWKLWFEGKSLELIDPFHKNTYVESEVMKCIHIGLLCVQEDAADRPTMSTVVCMLGSDTVALPKPTQPAFSVGRMFKNEDQVSKNSKNNSVDEVTLTSVSAR* 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1976 1165 Gene3D - 651 754 IPR038408 -
Psa1g1976 1165 Gene3D - 534 641 IPR038408 -
Psa1g1976 1165 Gene3D Phosphorylase Kinase; domain 1 812 922 - -
Psa1g1976 1165 SUPERFAMILY Clavaminate synthase-like 30 360 - -
Psa1g1976 1165 Gene3D Transferase(Phosphotransferase) domain 1 923 1125 - -
Psa1g1976 1165 CDD STKc_IRAK 853 1118 - -
Psa1g1976 1165 SMART serkin_6 847 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1976 1165 Pfam Protein tyrosine and serine/threonine kinase 850 1116 IPR001245 GO:0004672|GO:0006468
Psa1g1976 1165 ProSiteProfiles Gnk2-homologous domain profile. 648 754 IPR002902 -
Psa1g1976 1165 SUPERFAMILY Protein kinase-like (PK-like) 831 1134 IPR011009 -
Psa1g1976 1165 PANTHER PROTEIN KINASE DOMAIN 530 1162 - -
Psa1g1976 1165 Pfam Salt stress response/antifungal 670 748 IPR002902 -
Psa1g1976 1165 Pfam Salt stress response/antifungal 544 639 IPR002902 -
Psa1g1976 1165 Pfam non-haem dioxygenase in morphine synthesis N-terminal 63 164 IPR026992 -
Psa1g1976 1165 Gene3D - 23 352 IPR027443 -
Psa1g1976 1165 ProSiteProfiles Gnk2-homologous domain profile. 534 642 IPR002902 -
Psa1g1976 1165 Pfam 2OG-Fe(II) oxygenase superfamily 223 316 IPR044861 -
Psa1g1976 1165 ProSiteProfiles Protein kinase domain profile. 847 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1976 1165 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 530 1162 - -
Psa1g1976 1165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 968 980 IPR008271 GO:0004672|GO:0006468
Psa1g1976 1165 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 216 319 IPR005123 -
Psa1g1976 1165 ProSitePatterns Protein kinases ATP-binding region signature. 853 875 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1976 Psa-Chr1 142714268 142726638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1976 542 1165 Receptor kinase-like Gene Family AT4G05200 40.895 2.00e-162 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g1976 PK_Tyr_Ser-Thr 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1976 - - pvu:PHAVU_011G194700g 721.85