Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1975 ATGGAAGATCAAGAACAAAAACAACATGTTCAGACTCAAAGTTCCAACACCAATAATCCAAACAACACCGAAAAGAGTGAAACTGTGAGATCAAGATGGACACCAAAACCTGAACAAATCCTCATACTTGAGTCCATCTTCAATAGTGGAATGGTGAATCCACCAAAAGATGAAACTGTTAGAATCAGAAAACTTCTTGAGAAATTTGGACCTGTTGGTGATGCTAATGTCTTTTATTGGTTTCAAAATCGTCGCTCTCGCTCTCGTCGTCGTCTGAGACAGATGCAAGCTGCAGCCCAGCTAGCCGGAGGAGCCGGTGCAAATCTTTATCACCAATACCAGTGCAGCAACACCAACAGTAACTCTATGTCTGTTGGTACTGCTGTCGGTTTTGGTGGTTCATCAGGTCTCACTATGATGAACTCTCCTTCTGATTCTTATAATCATAATTTTTCGAGTTCATCTTCATCCTCTGGTGTTGGTGTCGGTGTCAGTGTCGGTGTTGGTGGTGGAGAAGAAGGGTTTCGTGGTTTATTTTTAGGTTCTTCTCAAATTAATTTCCCTGAGATTGATCATTCTTCTGCTGCTTCATCAGTTTTGAACCATTCTCATGATCATGCTTTAAATTTGAACTATCATCATTCAGGATTTGGGGGGAGCGATGTTTCCGGTTTGATCACAGTGTATATCAATGGAGTTGCAACAGAAGTAGCAAGAGGTGCAATTGACATGAAAACATTGTTTGGTGAAGATGTTATGTTAATTCATTCCTCTGGAGTCTCAGTTCCAACCAATGAGTTTGGTATTTTGATGCAGAGCTTGCATCATGGTGAAAGCTACTTTCTGGTTTCAAAGCAAACACAAGCATGA 870 0.4092 MEDQEQKQHVQTQSSNTNNPNNTEKSETVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGPVGDANVFYWFQNRRSRSRRRLRQMQAAAQLAGGAGANLYHQYQCSNTNSNSMSVGTAVGFGGSSGLTMMNSPSDSYNHNFSSSSSSSGVGVGVSVGVGGGEEGFRGLFLGSSQINFPEIDHSSAASSVLNHSHDHALNLNYHHSGFGGSDVSGLITVYINGVATEVARGAIDMKTLFGEDVMLIHSSGVSVPTNEFGILMQSLHHGESYFLVSKQTQA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1975 289 SMART HOX_1 28 95 IPR001356 GO:0003677
Psa1g1975 289 Gene3D - 16 95 - -
Psa1g1975 289 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
Psa1g1975 289 Pfam Homeodomain 30 90 IPR001356 GO:0003677
Psa1g1975 289 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 286 IPR044558 GO:0003700|GO:0048830
Psa1g1975 289 MobiDBLite consensus disorder prediction 1 33 - -
Psa1g1975 289 SUPERFAMILY Homeodomain-like 24 98 IPR009057 -
Psa1g1975 289 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1975 Psa-Chr1 141481001 141484113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1975 13 287 Wox Gene Family AT5G17810 48.789 1.94e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa1g1975 Homeodomain 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1975 - - lang:109335690 283.108