Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1954 ATGGAAGAATCTAAAAAATGTTGGAGAAAAGAAGTAGACGAAAATCTCAAGAGACTACACTCTCTCTTGTTCGGCGCAGAACGCGCCATTGAAAACCACGATTTCTCCTCCGCATACATCCTCTCTCTTCGTCTCATCGGATTCCTTGATTCTCATTCTCAAACGGAAACCGATCAAGCTTTCATTCAACACATTCGTCGTCAAGCCTTAACCTACCTTCACACAGCCAGAAAATCGCTAACTCCAGTAATTAATCGCCAAGCTTTTGAGCAAGTAAAGAGGTCATCAGGACCTGTTTTTGGCACAACAGGAGATATTGACATTGACAAGATACGGAATTCAAAATATTTTCAAGCTCTCAAACCATCTAAAGAAAAAGATTGCAATCAATTGGTCAATCAATTGAGGAAGCAAAACAAAACAGAAAAGGAAGCCTCAAAGGAAGGGGTGCAAGCAACGTTAACATCTTTGTATGGGAAAAGCAGTTTGAGGACTATTAATGGTTCCAAAAGTTTTTTCAACTTGAAAAATAATAGCTCCGAGGACTGCATGATTATTAGAAGGCCTCAATCACATCCCATCAATACAAAGGGTCCTGACTTCTCTTCTGTTATTGAGGTTGAAGGAGAGGAACGAGCTTATGGTAACACTTTTTCAACAAAACGTGCACACACTGAATATAACAGCCCAAGAGTTGGCTATGTCAAGTCACCTTCAAGCAAGGAAGAAGTTAATCCCGATGTTGCTGGCAATGGGTTTGTTACTGCCAGAGCAAAGTTGGAAATGGATGTAAAGCAAAAGCGAGGTGCCATTGGTTCTCCCAATGCATCTGTCTCACCACAATGCGACAACAATTCTGCCAACAGGCCATATGGTGGGAGATCATATGGTGTTCCACGACGTGGCATCCGTGGTAATTTTGTCCCTCCTATTAAATCCAATGGGAACAATACTGGAAATATAACTTCCCGAAATGCTGGAAAGGGTGATGATTCTTTAGACGAATCAACAAAAAAATGTTTGGAAATCCTGTGTGGCCCTGATGGTGAACTTCCTGAGAAGTTAAGGAATTTAGAACCTCGCCTCATTGAGCATGTCAGTAACGAGATTATGGATAAAAATCCCGATGTCCACTGGGATGACATTGCTGGATTAAAACATGCCAAACGTTGTGTCAATGAGATGGTCGTATTTCCTCTGCAACGTCCTGACTTATTTACGGGCTGCCGTTCTCCTGGGAGAGGCCTGCTTCTTTTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCTGGGGAGGCAAAAGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACCAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCACTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCTGTAATTTTTGTTGATGAAATAGATTCTCTTTTGTCTCAGCGTAAGTCAGACGGTGAGCATGAATCAAGTAGAAGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGCTTTGAAGGTGGTAACGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCGCGAAGGAGACTTACTAAAAGACTATATATTCCTCTACCATCCGCAGAGGCAAGAGGTTGCATTGCACGTACCCTTTTAGAGAAGGATGGATTATTAAATCTATCAAAGGAGGAAATGGATATTATATGTAACATTACTGATGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGACGCATCATTGGGTCCCTTGAGAGAGTTAGTGAGACAAGGTATAGACATTACAAAGTTGAAAAAGGAAGATATGAGGCCAATAACTCTTCAGGATTTTGAGAATTCCCTGAATGAGGTGAGGCCTTCTGTTTCACCCAATGAACTTGGAACTTATGAGGAATGGAACAAGAAATTTGGAAGCTTAGCACTTTAG 1974 0.4174 MEESKKCWRKEVDENLKRLHSLLFGAERAIENHDFSSAYILSLRLIGFLDSHSQTETDQAFIQHIRRQALTYLHTARKSLTPVINRQAFEQVKRSSGPVFGTTGDIDIDKIRNSKYFQALKPSKEKDCNQLVNQLRKQNKTEKEASKEGVQATLTSLYGKSSLRTINGSKSFFNLKNNSSEDCMIIRRPQSHPINTKGPDFSSVIEVEGEERAYGNTFSTKRAHTEYNSPRVGYVKSPSSKEEVNPDVAGNGFVTARAKLEMDVKQKRGAIGSPNASVSPQCDNNSANRPYGGRSYGVPRRGIRGNFVPPIKSNGNNTGNITSRNAGKGDDSLDESTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDKNPDVHWDDIAGLKHAKRCVNEMVVFPLQRPDLFTGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFEGGNEQILLIGATNRPQELDEAARRRLTKRLYIPLPSAEARGCIARTLLEKDGLLNLSKEEMDIICNITDGYSGSDMKNLVKDASLGPLRELVRQGIDITKLKKEDMRPITLQDFENSLNEVRPSVSPNELGTYEEWNKKFGSLAL* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1954 657 Gene3D - 547 633 - -
Psa1g1954 657 SMART AAA_5 412 548 IPR003593 -
Psa1g1954 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 652 IPR027417 -
Psa1g1954 657 MobiDBLite consensus disorder prediction 313 333 - -
Psa1g1954 657 CDD AAA 409 546 - -
Psa1g1954 657 PANTHER FIDGETIN-LIKE PROTEIN 1 124 654 - -
Psa1g1954 657 ProSitePatterns AAA-protein family signature. 518 537 IPR003960 GO:0005524|GO:0016887
Psa1g1954 657 Pfam Vps4 C terminal oligomerisation domain 619 653 IPR015415 -
Psa1g1954 657 Coils Coil 128 148 - -
Psa1g1954 657 PANTHER AAA DOMAIN-CONTAINING 124 654 - -
Psa1g1954 657 MobiDBLite consensus disorder prediction 313 327 - -
Psa1g1954 657 Pfam ATPase family associated with various cellular activities (AAA) 416 546 IPR003959 GO:0005524|GO:0016887
Psa1g1954 657 Gene3D - 375 649 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1954 Psa-Chr1 140839880 140847369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1954 353 656 Calmodulin-binding Proteins AT3G56690 31.715 3.55e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1954 K22766 - gmx:100776024 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1954 1 140839880 140847369 Psa1g1954 1 140839880 140847369 ECH